RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 TRAPPC3O43617 180 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 CLTAP09496 248 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 STAT6P42226 847 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 SOX4Q06945 474 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-203ENST00000459756 SLC10A6Q3KNW5 377 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 KANK3Q6NY19 840 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-203ENST00000459756 C15orf39Q6ZRI6 1047 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 DYMQ7RTS9 669 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 GPR149Q86SP6 731 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 MAP4K3Q8IVH8 894 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 CMASQ8NFW8 434 aaPredicted RBP17.6■□□□□ 0.41
COL7A1-203ENST00000459756 PIK3R5Q8WYR1 880 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 DDX12PQ92771 950 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 HAPLN2Q9GZV7 340 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 POMKQ9H5K3 350 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 PLEKHA5Q9HAU0 1116 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 SEL1LQ9UBV2 794 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 MUTYHQ9UIF7 546 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 PLXNA3P51805 1871 aa17.6■□□□□ 0.41
COL7A1-203ENST00000459756 MYMKA6NI61 221 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 MEFVO15553 781 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 F13A1P00488 732 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 WEE2P0C1S8 567 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 GAP43P17677 238 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 NMT1P30419 496 aaKnown RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 RPL9P32969 192 aaKnown RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 PSMD5Q16401 504 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 SEZ6Q53EL9 994 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 FOXD4L5Q5VV16 416 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 ATL3Q6DD88 541 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 PRSS55Q6UWB4 352 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 CYP26C1Q6V0L0 522 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 CEP57Q86XR8 500 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 FOXD4L4Q8WXT5 416 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 PANK2Q9BZ23 570 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 PLEKHA4Q9H4M7 779 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 GOLGA2P5Q9HBQ8 144 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 C11orf16Q9NQ32 467 aa17.59■□□□□ 0.41
COL7A1-203ENST00000459756 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.59■□□□□ 0.41
COL7A1-203ENST00000459756 A0A087X0B3 334 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 A0A0B4J269 797 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 PODXLO00592 558 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 OGTO15294 1046 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 TGM5O43548 720 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 CUTAO60888 179 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 CXCL8P10145 99 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 RPL17P18621 184 aaKnown RBP17.58■□□□□ 0.4
COL7A1-203ENST00000459756 FGFR3P22607 806 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 LILRA6Q6PI73 481 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 CD300LGQ6UXG3 332 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 ZNF720Q7Z2F6 126 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 SFR1Q86XK3 245 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 PALB2Q86YC2 1186 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 SPRYD3Q8NCJ5 442 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 C3orf58Q8NDZ4 430 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 LNX1Q8TBB1 728 aaPredicted RBP17.58■□□□□ 0.4
COL7A1-203ENST00000459756 HVCN1Q96D96 273 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 DNAJC19Q96DA6 116 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 LRFN3Q9BTN0 628 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 RHOBTB2Q9BYZ6 727 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 TSHZ2Q9NRE2 1034 aa17.58■□□□□ 0.4
COL7A1-203ENST00000459756 PDCD11Q14690 1871 aaKnown RBP17.58■□□□□ 0.4
COL7A1-203ENST00000459756 VWA8A3KMH1 1905 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 MTCL1Q9Y4B5 1905 aaKnown RBP17.57■□□□□ 0.4
COL7A1-203ENST00000459756 TTC26A0AVF1 554 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 FAM86C2PA6NEL3 165 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 FAM189A1O60320 539 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 IGFBP6P24592 240 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-203ENST00000459756 ZC2HC1CQ53FD0 456 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-203ENST00000459756 GLYCTKQ8IVS8 523 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 PDILTQ8N807 584 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 KCNG4Q8TDN1 519 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 C18orf25Q96B23 403 aaPredicted RBP17.57■□□□□ 0.4
COL7A1-203ENST00000459756 TSPAN18Q96SJ8 248 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 CLSTN3Q9BQT9 956 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 MSTO1Q9BUK6 570 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 MRPL44Q9H9J2 332 aaKnown RBP17.57■□□□□ 0.4
COL7A1-203ENST00000459756 USTQ9Y2C2 406 aa17.57■□□□□ 0.4
COL7A1-203ENST00000459756 CCDC195A0A1B0GUA6 201 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 PRR33A8MZF0 331 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 PPP1R37O75864 691 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 PAPLNO95428 1278 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 SPATA31D3P0C874 917 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 SP100P23497 879 aaPredicted RBP17.56■□□□□ 0.4
COL7A1-203ENST00000459756 TNFSF9P41273 254 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 PPP2R3AQ06190 1150 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 PKP1Q13835 747 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 SLFN12LQ6IEE8 588 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 SLC39A4Q6P5W5 647 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 SPATA31D4Q6ZUB0 917 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 KREMEN2Q8NCW0 462 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 LRRC27Q9C0I9 530 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 CUEDC2Q9H467 287 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 RPF1Q9H9Y2 349 aaKnown RBP17.56■□□□□ 0.4
COL7A1-203ENST00000459756 OLFML3Q9NRN5 406 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 ZDHHC7Q9NXF8 308 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 CFAP45Q9UL16 551 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 DENND4AQ7Z401 1863 aa17.56■□□□□ 0.4
COL7A1-203ENST00000459756 FRMD3A2A2Y4 597 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms