RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 KMT5AQ9NQR1 393 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 DDX19AQ9NUU7 478 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 KLK14Q9P0G3 267 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 LARSQ9P2J5 1176 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 MAFFQ9ULX9 164 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 HES2Q9Y543 173 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 H7C4K7 107 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 B4GALT5O43286 388 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 ZMYND10O75800 440 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 PAPLNO95428 1278 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 POU2F2P09086 479 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 MCF2P10911 925 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 ELF1P32519 619 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 GRM5P41594 1212 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 MRE11P49959 708 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 PSMD5Q16401 504 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 PPM1LQ5SGD2 360 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 FAM171A1Q5VUB5 890 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 ANKS3Q6ZW76 656 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 PALB2Q86YC2 1186 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 C4orf32Q8N8J7 132 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 ATOH1Q92858 354 aaPredicted RBP8.53□□□□□ -1.04
CD44-211ENST00000442151 ASIC4Q96FT7 647 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 SHDQ96IW2 340 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 NTPCRQ9BSD7 190 aaKnown RBP8.53□□□□□ -1.04
CD44-211ENST00000442151 EPS15L1Q9UBC2 864 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 WNT16Q9UBV4 365 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 SMC3Q9UQE7 1217 aa8.53□□□□□ -1.04
CD44-211ENST00000442151 CLUHO75153 1309 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 A0A087WWV3 80 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 ARHGEF37A1IGU5 675 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 RBAK-RBAKDNI3L0D1 243 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 RECQL4O94761 1208 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 EFEMP2O95967 443 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 PDCP20941 246 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 GUCY2CP25092 1073 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 PEX3P56589 373 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 LILRA6Q6PI73 481 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 MTSS1LQ765P7 747 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 TAS1R1Q7RTX1 841 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 CEP57Q86XR8 500 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 SPRYD3Q8NCJ5 442 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 SPIRE2Q8WWL2 714 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 VN1R3Q9BXE9 311 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 CCDC113Q9H0I3 377 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 PLEKHA5Q9HAU0 1116 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 DUSP12Q9UNI6 340 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 BACE2Q9Y5Z0 518 aa8.52□□□□□ -1.04
CD44-211ENST00000442151 ARID2Q68CP9 1835 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 TGM5O43548 720 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 B3GAT3O94766 335 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 SP100P23497 879 aaPredicted RBP8.52□□□□□ -1.05
CD44-211ENST00000442151 FSHRP23945 695 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 MARCKSP29966 332 aaPredicted RBP8.52□□□□□ -1.05
CD44-211ENST00000442151 UBA7P41226 1012 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 AFF1P51825 1210 aaKnown RBP8.52□□□□□ -1.05
CD44-211ENST00000442151 RAB33AQ14088 237 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 SUZ12Q15022 739 aaKnown RBP8.52□□□□□ -1.05
CD44-211ENST00000442151 ZNF568Q3ZCX4 644 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 HYIQ5T013 277 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 ZPBP2Q6X784 338 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 SYT2Q8N9I0 419 aaPredicted RBP8.52□□□□□ -1.05
CD44-211ENST00000442151 GSTCDQ8NEC7 633 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 APPL2Q8NEU8 664 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 ACO2Q99798 780 aaKnown RBP8.52□□□□□ -1.05
CD44-211ENST00000442151 GPR62Q9BZJ7 368 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 KCNK12Q9HB15 430 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 KCNH3Q9ULD8 1083 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 GDAQ9Y2T3 454 aa8.52□□□□□ -1.05
CD44-211ENST00000442151 CASTOR2A6NHX0 329 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 WNT7AO00755 349 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 ZNF197O14709 1029 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 SYN3O14994 580 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 HIP1RO75146 1068 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 BRD1O95696 1058 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 WEE2P0C1S8 567 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 PLS3P13797 630 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 MATR3P43243 847 aaKnown RBP eCLIP8.51□□□□□ -1.05
CD44-211ENST00000442151 NPTX2P47972 431 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 ATP2C1P98194 919 aaPredicted RBP8.51□□□□□ -1.05
CD44-211ENST00000442151 PFKPQ01813 784 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 ST3GAL1Q11201 340 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 NT5DC1Q5TFE4 455 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 LARP1BQ659C4 914 aaKnown RBP8.51□□□□□ -1.05
CD44-211ENST00000442151 RINT1Q6NUQ1 792 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 MPZL3Q6UWV2 235 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 C1orf186Q6ZWK4 172 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 BRAPQ7Z569 592 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 CDR2LQ86X02 465 aaPredicted RBP8.51□□□□□ -1.05
CD44-211ENST00000442151 ELMOD1Q8N336 334 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 RASSF8Q8NHQ8 419 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 SEMA4AQ9H3S1 761 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 ODF2LQ9ULJ1 636 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 NUB1Q9Y5A7 615 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 PCDHB6Q9Y5E3 794 aa8.51□□□□□ -1.05
CD44-211ENST00000442151 TDRD15B5MCY1 1934 aaKnown RBP8.5□□□□□ -1.05
CD44-211ENST00000442151 CLDN3O15551 220 aa8.5□□□□□ -1.05
CD44-211ENST00000442151 B4GALT3O60512 393 aa8.5□□□□□ -1.05
CD44-211ENST00000442151 DTNBO60941 627 aa8.5□□□□□ -1.05
CD44-211ENST00000442151 TOM1L1O75674 476 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms