RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 RNF39Q9H2S5 420 aa24.87■■□□□ 1.57
CPSF4-204ENST00000436336 DERAQ9Y315 318 aa24.87■■□□□ 1.57
CPSF4-204ENST00000436336 C2CD2Q9Y426 696 aa24.87■■□□□ 1.57
CPSF4-204ENST00000436336 TNNC2P02585 160 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 ITGA4P13612 1032 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 TFAMQ00059 246 aaKnown RBP24.86■■□□□ 1.57
CPSF4-204ENST00000436336 BIRC3Q13489 604 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 DBF4BQ8NFT6 615 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 LMO3Q8TAP4 145 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 CACTINQ8WUQ7 758 aaKnown RBP24.86■■□□□ 1.57
CPSF4-204ENST00000436336 TSPAN18Q96SJ8 248 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 INTS2Q9H0H0 1204 aaKnown RBP24.86■■□□□ 1.57
CPSF4-204ENST00000436336 CNTN3Q9P232 1028 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 KIAA0355O15063 1070 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 NFICP08651 508 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 TMEM132DQ14C87 1099 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 XKR4Q5GH76 650 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 DPY19L2P1Q6NXN4 242 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 TAS1R2Q8TE23 839 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 EDEM3Q9BZQ6 932 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 MTMR12Q9C0I1 747 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 RAB20Q9NX57 234 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 MICAL3Q7RTP6 2002 aa24.86■■□□□ 1.57
CPSF4-204ENST00000436336 TDRD15B5MCY1 1934 aaKnown RBP24.85■■□□□ 1.57
CPSF4-204ENST00000436336 A0A1W2PQJ5 194 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 CASP14P31944 242 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 RFC2P35250 354 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 TRAPPC11Q7Z392 1133 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 RTN4RL1Q86UN2 441 aaPredicted RBP24.85■■□□□ 1.57
CPSF4-204ENST00000436336 CPLX3Q8WVH0 158 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 PGBD4Q96DM1 585 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 FAM84AQ96KN4 292 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 TSPYL2Q9H2G4 693 aaPredicted RBP24.85■■□□□ 1.57
CPSF4-204ENST00000436336 SIX2Q9NPC8 291 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 C1orf112Q9NSG2 853 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 CAPN11Q9UMQ6 739 aa24.85■■□□□ 1.57
CPSF4-204ENST00000436336 PHACTR2O75167 634 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 NOL4O94818 638 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 TIMP1P01033 207 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 ACTN1P12814 892 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 KLHDC7AQ5VTJ3 777 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 SLC24A5Q71RS6 500 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 LINC01599Q8WXQ3 324 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 KIF12Q96FN5 646 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 GANQ9H2C0 597 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 CEP72Q9P209 647 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 FBXL5Q9UKA1 691 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 GIT1Q9Y2X7 761 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 DAAM1Q9Y4D1 1078 aa24.84■■□□□ 1.57
CPSF4-204ENST00000436336 C9IYK1 514 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 AKR1B15C9JRZ8 316 aaPredicted RBP24.83■■□□□ 1.57
CPSF4-204ENST00000436336 EPHB6O15197 1021 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 FXR1P51114 621 aaKnown RBP eCLIP24.83■■□□□ 1.57
CPSF4-204ENST00000436336 ECHDC2Q86YB7 292 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 CNGA4Q8IV77 575 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 SEMA4DQ92854 862 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 PRDM5Q9NQX1 630 aaPredicted RBP24.83■■□□□ 1.57
CPSF4-204ENST00000436336 KLK14Q9P0G3 267 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 TRIM43BA6NCK2 446 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 ZC3H11AO75152 810 aaKnown RBP eCLIP24.83■■□□□ 1.579e-6■■□□□ 13.5
CPSF4-204ENST00000436336 VNN1O95497 513 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 HLA-DRAP01903 254 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 KCNE1P15382 129 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 PIK3CAP42336 1068 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 CCDC150Q8NCX0 1101 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 TRIM43Q96BQ3 446 aaPredicted RBP24.83■■□□□ 1.57
CPSF4-204ENST00000436336 CXCL16Q9H2A7 254 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 UBN1Q9NPG3 1134 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 APEX2Q9UBZ4 518 aa24.83■■□□□ 1.57
CPSF4-204ENST00000436336 LUC7L2Q9Y383 392 aaKnown RBP24.83■■□□□ 1.57
CPSF4-204ENST00000436336 MFAP3LO75121 409 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 UCHL3P15374 230 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 ATF7P17544 494 aaPredicted RBP24.82■■□□□ 1.56
CPSF4-204ENST00000436336 FAM189BP81408 668 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 APBA1Q02410 837 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 ZBTB6Q15916 424 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 AGMOQ6ZNB7 445 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 CACNA2D4Q7Z3S7 1137 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 TC2NQ8N9U0 490 aa24.82■■□□□ 1.56
CPSF4-204ENST00000436336 ZMAT2Q96NC0 199 aaKnown RBP24.82■■□□□ 1.56
CPSF4-204ENST00000436336 SMIM28A0A1B0GU29 152 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 MEIS3P2A8K0S8 358 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 LRRN2O75325 713 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 EOMESO95936 686 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 RAG1P15918 1043 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 RFX1P22670 979 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 ADKP55263 362 aaKnown RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 POLR2FP61218 127 aaKnown RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 NCOA4Q13772 614 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 ZNF598Q86UK7 904 aaKnown RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 ZNF397Q8NF99 534 aaPredicted RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 LPPQ93052 612 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 UBQLN1Q9UMX0 589 aaKnown RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 LTBP2Q14767 1821 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 RNF225M0QZC1 329 aaPredicted RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 XPOTO43592 962 aaKnown RBP24.81■■□□□ 1.56
CPSF4-204ENST00000436336 KRT9P35527 623 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 ZBED6P86452 979 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 DEFB128Q7Z7B8 93 aa24.81■■□□□ 1.56
CPSF4-204ENST00000436336 C1orf127Q8N9H9 656 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms