RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MLH1P40692 756 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 COPB1P53618 953 aaKnown RBP10.92□□□□□ -0.66
CD44-207ENST00000425428 MYL7Q01449 175 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 MYO1EQ12965 1108 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 GRIK3Q13003 919 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 SLC10A6Q3KNW5 377 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 CRELD2Q6UXH1 353 aaPredicted RBP10.92□□□□□ -0.66
CD44-207ENST00000425428 GBP6Q6ZN66 633 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 GAS2L3Q86XJ1 694 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 DRC7Q8IY82 874 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 FAM81BQ96LP2 452 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 SLC9A7Q96T83 725 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 GAD1Q99259 594 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 HAPLN2Q9GZV7 340 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 CNTN3Q9P232 1028 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 ANK1P16157 1881 aa10.92□□□□□ -0.66
CD44-207ENST00000425428 TTC26A0AVF1 554 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 ARHGEF37A1IGU5 675 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 KCNE1P15382 129 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 ITGB8P26012 769 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 PIK3CAP42336 1068 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 FMO5P49326 533 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 NOMO2Q5JPE7 1267 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 JADE1Q6IE81 842 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 PHOSPHO2Q8TCD6 241 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 LPPQ93052 612 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 DDX27Q96GQ7 796 aaKnown RBP10.91□□□□□ -0.66
CD44-207ENST00000425428 ZNF560Q96MR9 790 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 UROC1Q96N76 676 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 YME1L1Q96TA2 773 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 UBE2OQ9C0C9 1292 aaKnown RBP10.91□□□□□ -0.66
CD44-207ENST00000425428 TMEM117Q9H0C3 514 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 INTS13Q9NVM9 706 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 IFNKQ9P0W0 207 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 ITGA11Q9UKX5 1188 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 LTBP2Q14767 1821 aa10.91□□□□□ -0.66
CD44-207ENST00000425428 PDCD11Q14690 1871 aaKnown RBP10.91□□□□□ -0.66
CD44-207ENST00000425428 SMIM28A0A1B0GU29 152 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 GTPBP10A4D1E9 387 aaKnown RBP10.9□□□□□ -0.66
CD44-207ENST00000425428 LRRC10BA6NIK2 292 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 LRRIQ3A6PVS8 624 aaPredicted RBP10.9□□□□□ -0.66
CD44-207ENST00000425428 FAM189A1O60320 539 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 CAPN15O75808 1086 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 TRIM49P0CI25 452 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 TRIM49CP0CI26 452 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 ATP1A3P13637 1013 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 CYP3A5P20815 502 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 PAX3P23760 479 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 PNPLA4P41247 253 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 GCLMP48507 274 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 WDR5P61964 334 aaKnown RBP10.9□□□□□ -0.66
CD44-207ENST00000425428 RBP5P82980 135 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 GPNMBQ14956 572 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 ZBTB41Q5SVQ8 909 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 RTN4RL1Q86UN2 441 aaPredicted RBP10.9□□□□□ -0.66
CD44-207ENST00000425428 LRRC43Q8N309 656 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 FBXL13Q8NEE6 735 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 HELQQ8TDG4 1101 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 HERVK_113Q902F9 699 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 IQCDQ96DY2 449 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 RNPC3Q96LT9 517 aaKnown RBP10.9□□□□□ -0.66
CD44-207ENST00000425428 MED15Q96RN5 788 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 OSBPL7Q9BZF2 842 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 AAASQ9NRG9 546 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 DPP3Q9NY33 737 aa10.9□□□□□ -0.66
CD44-207ENST00000425428 TBKBP1A7MCY6 615 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 LGALS16A8MUM7 142 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 RPL9P32969 192 aaKnown RBP10.9□□□□□ -0.67
CD44-207ENST00000425428 EXOC3L4Q17RC7 722 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 SGSM1Q2NKQ1 1148 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 TMEM240Q5SV17 173 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 SARM1Q6SZW1 724 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 AGMOQ6ZNB7 445 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 ZNF598Q86UK7 904 aaKnown RBP10.9□□□□□ -0.67
CD44-207ENST00000425428 IRF2BP1Q8IU81 584 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 FMNL3Q8IVF7 1028 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 TMEM192Q8IY95 271 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 ZSWIM2Q8NEG5 633 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 NEK11Q8NG66 645 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 TOP1MTQ969P6 601 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 SLC35C1Q96A29 364 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 BORCS6Q96GS4 357 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.9□□□□□ -0.67
CD44-207ENST00000425428 NUP58Q9BVL2 599 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 INSL6Q9Y581 213 aa10.9□□□□□ -0.67
CD44-207ENST00000425428 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.9□□□□□ -0.67
CD44-207ENST00000425428 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 OFD1O75665 1012 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 POMCP01189 267 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 ALDH2P05091 517 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 NFICP08651 508 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 ATP2A2P16615 1042 aaKnown RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 ATICP31939 592 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 MAGEA10P43363 369 aaPredicted RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 ALDH7A1P49419 539 aaKnown RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 SCNN1GP51170 649 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 CLDN10P78369 228 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 TUSC3Q13454 348 aa10.89□□□□□ -0.67
CD44-207ENST00000425428 BTG3Q14201 252 aaPredicted RBP10.89□□□□□ -0.67
CD44-207ENST00000425428 TSR1Q2NL82 804 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms