RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 ARPP19P56211 112 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 NTHL1P78549 312 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 RSPO4Q2I0M5 234 aaPredicted RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ATF7IP2Q5U623 682 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 C1orf228Q6PIY5 440 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 TPRG1Q6ZUI0 275 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 PDZD4Q76G19 769 aaPredicted RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 LEMD2Q8NC56 503 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 APPL2Q8NEU8 664 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ITFG1Q8TB96 612 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 DNASE1L2Q92874 299 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 E2F7Q96AV8 911 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ELSPBP1Q96BH3 223 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 MTMR9Q96QG7 549 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 KXD1Q9BQD3 176 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 RPP25Q9BUL9 199 aaKnown RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 DDX23Q9BUQ8 820 aaKnown RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 TRMT61BQ9BVS5 477 aaKnown RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 GPR88Q9GZN0 384 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 GPRC5CQ9NQ84 441 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 AVENQ9NQS1 362 aaPredicted RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 GJB4Q9NTQ9 266 aa13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CDV3Q9UKY7 258 aaKnown RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 NOL7Q9UMY1 257 aaKnown RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 RBM19Q9Y4C8 960 aaKnown RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.48□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CCDC169A6NNP5 214 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 MICAL2O94851 1124 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 RPL9P32969 192 aaKnown RBP13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CLCNKBP51801 687 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 TPGS2Q68CL5 300 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 YAF2Q8IY57 180 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 DCLK2Q8N568 766 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ST13P5Q8NFI4 369 aaPredicted RBP13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ACAP3Q96P50 834 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 PAAF1Q9BRP4 392 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CYP4F11Q9HBI6 524 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 DLL3Q9NYJ7 618 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 USP18Q9UMW8 372 aa13.47□□□□□ -0.25
HLA-DQB3-203ENST00000425319 A0A087WWV3 80 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 POTEMA6NI47 508 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 PTGESO14684 152 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 SYN3O14994 580 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 FOXD2O60548 495 aaPredicted RBP13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 OR52Z1P0C646 297 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 GLULP15104 373 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ATF2P15336 505 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CCT6AP40227 531 aaKnown RBP13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 STRN3Q13033 797 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 UPP1Q16831 310 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 EARS2Q5JPH6 523 aaKnown RBP13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 NPAS3Q8IXF0 933 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CELF5Q8N6W0 485 aaKnown RBP13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 FAM200AQ8TCP9 573 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CSGALNACT1Q8TDX6 532 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 ING5Q8WYH8 240 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CLDN23Q96B33 292 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CORO1BQ9BR76 489 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 OXCT2Q9BYC2 517 aaPredicted RBP13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 DNM3Q9UQ16 869 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 TNFSF13BQ9Y275 285 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 CACNA1HO95180 2353 aa13.46□□□□□ -0.25
HLA-DQB3-203ENST00000425319 WDFY4Q6ZS81 3184 aa13.46□□□□□ -0.26
HLA-DQB3-203ENST00000425319 PLXNA3P51805 1871 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 SMIM28A0A1B0GU29 152 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 ZNF263O14978 683 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 LRRN2O75325 713 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 SPATA31C1P0DKV0 1188 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 CD72P21854 359 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 GRM5P41594 1212 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 CCR3P51677 355 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 SMTNP53814 917 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 DMP1Q13316 513 aaPredicted RBP13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 PLD1Q13393 1074 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 CTXN3Q4LDR2 81 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 FAM184AQ8NB25 1140 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 SUMF1Q8NBK3 374 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 DEPDC1BQ8WUY9 529 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 FAM3CQ92520 227 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 GTF3C6Q969F1 213 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 MSANTD3Q96H12 275 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 RTKNQ9BST9 563 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 MRPL4Q9BYD3 311 aaKnown RBP13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 HCFC1R1Q9NWW0 138 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 LRWD1Q9UFC0 647 aa13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 NDRG2Q9UN36 371 aaKnown RBP13.45□□□□□ -0.26
HLA-DQB3-203ENST00000425319 ARHGEF37A1IGU5 675 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 FAM205CA6NFA0 338 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 PODXLO00592 558 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 DPYSL4O14531 572 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 XPOTO43592 962 aaKnown RBP13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 MED24O75448 989 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 CTDNEP1O95476 244 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 FDPSP14324 419 aaKnown RBP13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 PSMC3P17980 439 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 TKTP29401 623 aaKnown RBP13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 FOSBP53539 338 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 PDIA5Q14554 519 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 PTPAQ15257 358 aa13.44□□□□□ -0.26
HLA-DQB3-203ENST00000425319 ZNF174Q15697 407 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms