RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ACCSQ96QU6 501 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 BHMT2Q9H2M3 363 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SMARCAD1Q9H4L7 1026 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 GAS2O43903 313 aaKnown RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 MSH2P43246 934 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 EIF2B5Q13144 721 aaKnown RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 SPRYD7Q5W111 196 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 UNC13DQ70J99 1090 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SYTL5Q8TDW5 730 aaPredicted RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 SNED1Q8TER0 1413 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 CHMP6Q96FZ7 201 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 P2RX7Q99572 595 aaKnown RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 C2orf40Q9H1Z8 148 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 GJB4Q9NTQ9 266 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SCHIP1Q9P0W5 487 aaPredicted RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 K7ENM7 598 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 EYA4O95677 639 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 TXNP10599 105 aaKnown RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 HOXD11P31277 338 aaPredicted RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 SLC26A2P50443 739 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 MAP3K10Q02779 954 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SMUG1Q53HV7 270 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 XKR3Q5GH77 459 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 PHLDB3Q6NSJ2 640 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 ANKRD13CQ8N6S4 541 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 NELFBQ8WX92 580 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 PRCCQ92733 491 aaPredicted RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 SLX1AQ9BQ83 275 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 PLCB1Q9NQ66 1216 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 PXMP2Q9NR77 195 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 ATP1A3P13637 1013 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 TUBA4AP68366 448 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 ITIH3Q06033 890 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 PNOCQ13519 176 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 CLPPQ16740 277 aaPredicted RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 VWA3BQ502W6 1294 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 TTMPQ5BVD1 217 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 DQX1Q8TE96 717 aaKnown RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 HPS3Q969F9 1004 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SLC7A5P2Q9GIP4 190 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 GOLPH3LQ9H4A5 285 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 CNOT10Q9H9A5 744 aaKnown RBP10.41□□□□□ -0.74
USP54-205ENST00000424265 MKS1Q9NXB0 559 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SNCAIPQ9Y6H5 919 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 QSER1Q2KHR3 1735 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 VSIG1Q86XK7 387 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 SLC43A3Q8NBI5 491 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 RUBCNQ92622 972 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 ZIM3Q96PE6 472 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 OSBPL7Q9BZF2 842 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 DNAJC18Q9H819 358 aa10.41□□□□□ -0.74
USP54-205ENST00000424265 MTRF1O75570 445 aaKnown RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 SUN1O94901 812 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 SURF1Q15526 300 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 C6orf183Q5T699 404 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 TRPM8Q7Z2W7 1104 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 LRRC8CQ8TDW0 803 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 LRRC45Q96CN5 670 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 SPATA33Q96N06 139 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 ANKEF1Q9NU02 776 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 HGSO14964 777 aaPredicted RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 ATP2A1O14983 1001 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 ALDH5A1P51649 535 aaPredicted RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 KRT83P78385 493 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 KPNB1Q14974 876 aaKnown RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 FAM110CQ1W6H9 321 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 ANO7Q6IWH7 933 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 ILDR2Q71H61 639 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 METTL13Q8N6R0 699 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 CLIP3Q96DZ5 547 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 PAGE5Q96GU1 130 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 PDCD2LQ9BRP1 358 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 PHF20L1A8MW92 1017 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 MAGEB2O15479 319 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 XPOTO43592 962 aaKnown RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 ACADSP16219 412 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 CTNNA1P35221 906 aaKnown RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 LIG4P49917 911 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 CPT1AP50416 773 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 EIF2AK1Q9BQI3 630 aaKnown RBP10.4□□□□□ -0.74
USP54-205ENST00000424265 THEGQ9P2T0 379 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 ADGRG1Q9Y653 693 aa10.4□□□□□ -0.74
USP54-205ENST00000424265 MYH7P12883 1935 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 SPDYE16A6NNV3 312 aaPredicted RBP10.4□□□□□ -0.75
USP54-205ENST00000424265 SART1O43290 800 aaKnown RBP10.4□□□□□ -0.75
USP54-205ENST00000424265 EXOC3O60645 756 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 KIF5AQ12840 1032 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 FAM47CQ5HY64 1035 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 SLFN12LQ6IEE8 588 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 PPP1R21Q6ZMI0 780 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 SCAIQ8N9R8 606 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 ARHGEF2Q92974 986 aaKnown RBP10.4□□□□□ -0.75
USP54-205ENST00000424265 TAAR1Q96RJ0 339 aa10.4□□□□□ -0.75
USP54-205ENST00000424265 ELAC2Q9BQ52 826 aaKnown RBP10.4□□□□□ -0.75
USP54-205ENST00000424265 UBTFL6P0CB48 400 aaPredicted RBP10.39□□□□□ -0.75
USP54-205ENST00000424265 KRT4P19013 534 aa10.39□□□□□ -0.75
USP54-205ENST00000424265 CIITAP33076 1130 aa10.39□□□□□ -0.75
USP54-205ENST00000424265 YWHAEP62258 255 aaKnown RBP10.39□□□□□ -0.75
USP54-205ENST00000424265 PPP2R2AP63151 447 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms