RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SARM1Q6SZW1 724 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 ANKRD13CQ8N6S4 541 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 C10orf53Q8N6V4 93 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 SLC7A14Q8TBB6 771 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 SAAL1Q96ER3 474 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 SNF8Q96H20 258 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 PALMDQ9NP74 551 aa7.21□□□□□ -1.25
SCN1A-204ENST00000423058 DBNLQ9UJU6 430 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 AGO2Q9UKV8 859 aaKnown RBP7.21□□□□□ -1.25
SCN1A-204ENST00000423058 CCDC189A1A4V9 331 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 C19orf81C9J6K1 198 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 LZTS3O60299 673 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 FTCDO95954 541 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CACNB1Q02641 598 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 DGKDQ16760 1214 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ALKBH5Q6P6C2 394 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 RGS9BPQ6ZS82 235 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 PLD3Q8IV08 490 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 C19orf60Q96EN9 201 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 L3MBTL3Q96JM7 780 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 EMILIN2Q9BXX0 1053 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 MRPL1Q9BYD6 325 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 NLNQ9BYT8 704 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 RPAP3Q9H6T3 665 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 KRT84Q9NSB2 600 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SLC39A10Q9ULF5 831 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 UTYO14607 1347 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 EVPLLA8MZ36 301 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 HOXA2O43364 376 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CAND2O75155 1236 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 UPP2O95045 317 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SCP2P22307 547 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 BRD2P25440 801 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CSE1LP55060 971 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SKP1P63208 163 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 EMBQ6PCB8 327 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SYDE1Q6ZW31 735 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ST13P5Q8NFI4 369 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 EEF2KMTQ96G04 330 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CDK5RAP1Q96SZ6 601 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SEPT5Q99719 369 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 DNAJC12Q9UKB3 198 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF335Q9H4Z2 1342 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SH2B2O14492 632 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 NDUFA10O95299 355 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SLC2A3P11169 496 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ITGA4P13612 1032 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 GSPT1P15170 499 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SERPINB4P48594 390 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 NPY2RP49146 381 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 HIRAP54198 1017 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 KCNB1Q14721 858 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 PTPAQ15257 358 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 GSTA3Q16772 222 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 KRT77Q7Z794 578 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 DGKHQ86XP1 1220 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CCDC60Q8IWA6 550 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CLYBLQ8N0X4 340 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 MMGT1Q8N4V1 131 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 SHCBP1Q8NEM2 672 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 LPAR1Q92633 364 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 DTNBP1Q96EV8 351 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 USE1Q9NZ43 259 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ZFATQ9P243 1243 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 RAB23Q9ULC3 237 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 TCOF1Q13428 1488 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ENC1O14682 589 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 GH1P01241 217 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 DYNC1I2Q13409 638 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 PDIA6Q15084 440 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CCDC142Q17RM4 750 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 NUGGCQ68CJ6 796 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF564Q8TBZ8 553 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 RUBCNQ92622 972 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 VMP1Q96GC9 406 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 BRD8Q9H0E9 1235 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 COPS7BQ9H9Q2 264 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 THG1LQ9NWX6 298 aaKnown RBP7.21□□□□□ -1.26
SCN1A-204ENST00000423058 CD274Q9NZQ7 290 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 PCDHGA4Q9Y5G9 962 aa7.21□□□□□ -1.26
SCN1A-204ENST00000423058 HEG1Q9ULI3 1381 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 RRN3P2A6NIE6 340 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SLC26A4O43511 780 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 EGFRP00533 1210 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 GTF2E2P29084 291 aaKnown RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 LIFRP42702 1097 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SLC1A1P43005 524 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 KIF23Q02241 960 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SLC13A1Q9BZW2 595 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 WDR35Q9P2L0 1181 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 FRMD3A2A2Y4 597 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 MTSS1O43312 755 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 RPS6KA5O75582 802 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 FYNP06241 537 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 SOAT1P35610 550 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 CDH6P55285 790 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 PLD1Q13393 1074 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 NNTQ13423 1086 aa7.2□□□□□ -1.26
SCN1A-204ENST00000423058 KNOP1Q1ED39 458 aaKnown RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms