RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PQLC1Q8N2U9 271 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 OR7D4Q8NG98 312 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 CCHCR1Q8TD31 782 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 LRTOMTQ8WZ04 291 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 GJA10Q969M2 543 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 TMX3Q96JJ7 454 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 MPHOSPH9Q99550 1183 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 PDCD2LQ9BRP1 358 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 NAA15Q9BXJ9 866 aaKnown RBP5.78□□□□□ -1.48
VPS54-204ENST00000416400 LANCL2Q9NS86 450 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 TAGLN3Q9UI15 199 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 HDAC5Q9UQL6 1122 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 SIK3Q9Y2K2 1263 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 A0A088AWK7 358 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 CFAP69A5D8W1 941 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 LRRC14BA6NHZ5 514 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 FOXS1O43638 330 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 MFAP3LO75121 409 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 COMTP21964 271 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 AK2P54819 239 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 TARDBPQ13148 414 aaKnown RBP eCLIP5.77□□□□□ -1.49
VPS54-204ENST00000416400 RAB39AQ14964 217 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 POLD3Q15054 466 aaPredicted RBP5.77□□□□□ -1.49
VPS54-204ENST00000416400 FKBP15Q5T1M5 1219 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 C10orf62Q5T681 223 aaPredicted RBP5.77□□□□□ -1.49
VPS54-204ENST00000416400 SWSAP1Q6NVH7 229 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 GADL1Q6ZQY3 521 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 GSPT2Q8IYD1 628 aaKnown RBP5.77□□□□□ -1.49
VPS54-204ENST00000416400 CYFIP2Q96F07 1278 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 IL17RAQ96F46 866 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 SLC35A4Q96G79 324 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 FAM167AQ96KS9 214 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 RBM15Q96T37 977 aaKnown RBP eCLIP5.77□□□□□ -1.49
VPS54-204ENST00000416400 MYD88Q99836 296 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 APOL5Q9BWW9 433 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 SENP6Q9GZR1 1112 aaPredicted RBP5.77□□□□□ -1.49
VPS54-204ENST00000416400 AGO3Q9H9G7 860 aaKnown RBP5.77□□□□□ -1.49
VPS54-204ENST00000416400 NLRC4Q9NPP4 1024 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 LMBRD1Q9NUN5 540 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 TMEM140Q9NV12 185 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 SMPD4Q9NXE4 827 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 GPRC5DQ9NZD1 345 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 TRPS1Q9UHF7 1281 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 FEZ2Q9UHY8 353 aaPredicted RBP5.77□□□□□ -1.49
VPS54-204ENST00000416400 DAAM1Q9Y4D1 1078 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 SLC30A1Q9Y6M5 507 aa5.77□□□□□ -1.49
VPS54-204ENST00000416400 ARID1BQ8NFD5 2236 aaPredicted RBP5.76□□□□□ -1.49
VPS54-204ENST00000416400 PATE3B3GLJ2 98 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 H3BUI4 141 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 CYP27B1O15528 508 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 ITGA10O75578 1167 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 IPO13O94829 963 aaKnown RBP5.76□□□□□ -1.49
VPS54-204ENST00000416400 GNAT2P19087 354 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 SERPINB3P29508 390 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 CRHR1P34998 444 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 PTPN7P35236 360 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 SREBF1P36956 1147 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 GZMKP49863 264 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 APBA1Q02410 837 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 IFIT5Q13325 482 aaKnown RBP5.76□□□□□ -1.49
VPS54-204ENST00000416400 FGL2Q14314 439 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 KHDC1Q4VXA5 237 aaKnown RBP5.76□□□□□ -1.49
VPS54-204ENST00000416400 HEATR3Q7Z4Q2 680 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 SRLQ86TD4 932 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 ANKRD35Q8N283 1001 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 TTC9BQ8N6N2 239 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 PLBD2Q8NHP8 589 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 MRGPRX4Q96LA9 322 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 VRK1Q99986 396 aaPredicted RBP5.76□□□□□ -1.49
VPS54-204ENST00000416400 ARPC5LQ9BPX5 153 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 KRTAP4-11Q9BYQ6 195 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 NUP62CLQ9H1M0 184 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 ARMT1Q9H993 441 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 CALCOCO1Q9P1Z2 691 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 ABCF2Q9UG63 623 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 ST6GALNAC2Q9UJ37 374 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 PCDHA3Q9Y5H8 950 aa5.76□□□□□ -1.49
VPS54-204ENST00000416400 MYBBP1AQ9BQG0 1328 aaKnown RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 CAPN14A8MX76 684 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 IFRD1O00458 451 aaPredicted RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 ADCY6O43306 1168 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 GPR32O75388 356 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 TYRP14679 529 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 TM4SF4P48230 202 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 ADAM8P78325 824 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 NKX6-1P78426 367 aaPredicted RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 FOXL1Q12952 345 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 ELAVL1Q15717 326 aaKnown RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 APOA5Q6Q788 366 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 TOGARAM2Q6ZUX3 1019 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 FAM186BQ8IYM0 893 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 KRT78Q8N1N4 520 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 IFI44Q8TCB0 444 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 Q8TCH9 128 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 ZNF512Q96ME7 567 aaPredicted RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 NT5C1BQ96P26 610 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 DMRTA2Q96SC8 542 aa5.75□□□□□ -1.49
VPS54-204ENST00000416400 CDK5RAP1Q96SZ6 601 aaKnown RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 SSBP3Q9BWW4 388 aaPredicted RBP5.75□□□□□ -1.49
VPS54-204ENST00000416400 KRTAP4-5Q9BYR2 181 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms