RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 A0A087WZ62 844 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 CREB3O43889 395 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 MAP3K6O95382 1288 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ITGB3P05106 788 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 CLTAP09496 248 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 IER5Q5VY09 327 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 CCDC117Q8IWD4 279 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ETNPPLQ8TBG4 499 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 SREK1Q8WXA9 508 aaKnown RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 FDXACB1Q9BRP7 624 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 RRAGCQ9HB90 399 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 GBA2Q9HCG7 927 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 SAYSD1Q9NPB0 183 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 L1RE1Q9UN81 338 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 GRID2IPA4D2P6 1211 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ANKRD63C9JTQ0 380 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 EXTL3O43909 919 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 STAMBPO95630 424 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ZBED1O96006 694 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 KRT3P12035 628 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ZNF131P52739 623 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 IRX4P78413 519 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 CACNB2Q08289 660 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 NME3Q13232 169 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 CCDC38Q502W7 563 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 RWDD4Q6NW29 188 aaKnown RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 C1orf186Q6ZWK4 172 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 IRF2BP1Q8IU81 584 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 PARP4Q9UKK3 1724 aaKnown RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 PDHXO00330 501 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 GBP1P32455 592 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 GCKP35557 465 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ARSHQ5FYA8 562 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 GPAT2Q6NUI2 795 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ARMCX2Q7L311 632 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 VSIG10LQ86VR7 867 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 GINM1Q9NU53 330 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 CPSF2Q9P2I0 782 aaKnown RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 PCDHB2Q9Y5E7 798 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.88□□□□□ -0.51
PTPRF-204ENST00000412568 ZNF541Q9H0D2 1346 aa11.88□□□□□ -0.51
PTPRF-204ENST00000412568 COL14A1Q05707 1796 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 KRT14P02533 472 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 CALB1P05937 261 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 GNAT1P11488 350 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 GUCY2CP25092 1073 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 SDC4P31431 198 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 TMEM132DQ14C87 1099 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 C1orf228Q6PIY5 440 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 ZNF507Q8TCN5 953 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 HSD3B7Q9H2F3 369 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 ANKZF1Q9H8Y5 726 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 FBXL5Q9UKA1 691 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 EXOC1LA0A1B0GW35 172 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 HMGB1P1B2RPK0 211 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 RAD51CO43502 376 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 TJP3O95049 919 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 RPSAP08865 295 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 CDH6P55285 790 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 LMNB2Q03252 620 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 UGCGQ16739 394 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 PAPD7Q5XG87 772 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 ENOSF1Q7L5Y1 443 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 C18orf8Q96DM3 657 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 SIK2Q9H0K1 926 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 DHX35Q9H5Z1 703 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 SETD4Q9NVD3 440 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 CYP39A1Q9NYL5 469 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 HPCAL4Q9UM19 191 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 A0A087WUV0 522 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 INSRRP14616 1297 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 CYP2C19P33261 490 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 RFC5P40937 340 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 ALDH5A1P51649 535 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 ITGB3BPQ13352 177 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 PAN2Q504Q3 1202 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 EP400NLQ6ZTU2 488 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 RHOT1Q8IXI2 618 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 C1orf131Q8NDD1 294 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 NSMCE1Q8WV22 266 aa11.87□□□□□ -0.51
PTPRF-204ENST00000412568 HNRNPLLQ8WVV9 542 aaKnown RBP11.87□□□□□ -0.51
PTPRF-204ENST00000412568 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.87□□□□□ -0.511e-6■■■■□ 19.9
PTPRF-204ENST00000412568 F8VZ95 297 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 NPTXRO95502 500 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 GJB1P08034 283 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 INHBAP08476 426 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 RFX1P22670 979 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 PHBP35232 272 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 NUMBP49757 651 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 MAGOHP61326 146 aaKnown RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 GPS1Q13098 491 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 TREML2Q5T2D2 321 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 LGSNQ5TDP6 509 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 LRRC55Q6ZSA7 311 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 LMNTD2Q8IXW0 634 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 P3H4Q92791 437 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ARHGEF2Q92974 986 aaKnown RBP11.86□□□□□ -0.51
PTPRF-204ENST00000412568 TBC1D31Q96DN5 1066 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 SMYD2Q9NRG4 433 aa11.86□□□□□ -0.51
PTPRF-204ENST00000412568 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms