RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 LNX1Q8TBB1 728 aaPredicted RBP20.84■□□□□ 0.93
SF3A1-202ENST00000411423 FGFBP2Q9BYJ0 223 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 MAN1C1Q9NR34 630 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 KCNG1Q9UIX4 513 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 C2orf16Q68DN1 1984 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 CLDN3O15551 220 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 DCXO43602 365 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 PPP6R2O75170 966 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 TBCAO75347 108 aaKnown RBP20.83■□□□□ 0.93
SF3A1-202ENST00000411423 ADH1AP07327 375 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 SPAG1Q07617 926 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 AXDND1Q5T1B0 1012 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-202ENST00000411423 LILRA6Q6PI73 481 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 SHC4Q6S5L8 630 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 CEP57Q86XR8 500 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 MAP4K3Q8IVH8 894 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 PDILTQ8N807 584 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 STAMQ92783 540 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 BICD1Q96G01 975 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 CHAMP1Q96JM3 812 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 CLSTN3Q9BQT9 956 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 LRFN3Q9BTN0 628 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 STRA6Q9BX79 667 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 TOPORSQ9NS56 1045 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-202ENST00000411423 FNIP2Q9P278 1114 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 TUBGCP4Q9UGJ1 667 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 SSX2IPQ9Y2D8 614 aa20.83■□□□□ 0.93
SF3A1-202ENST00000411423 DENND4AQ7Z401 1863 aa20.83■□□□□ 0.92
SF3A1-202ENST00000411423 CITO14578 2027 aa20.83■□□□□ 0.92
SF3A1-202ENST00000411423 H0YCG3 227 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 TGM5O43548 720 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 RFPL2O75678 378 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 PPP1R37O75864 691 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 B3GAT3O94766 335 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 YEATS4O95619 227 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 HSP90AA1P07900 732 aaKnown RBP20.82■□□□□ 0.92
SF3A1-202ENST00000411423 LIG4P49917 911 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 KCNA1Q09470 495 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 E2F4Q16254 413 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 HERC4Q5GLZ8 1057 aaPredicted RBP20.82■□□□□ 0.92
SF3A1-202ENST00000411423 CES5AQ6NT32 575 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 DCLRE1AQ6PJP8 1040 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 RSPO2Q6UXX9 243 aaPredicted RBP20.82■□□□□ 0.92
SF3A1-202ENST00000411423 SV2BQ7L1I2 683 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 GPR149Q86SP6 731 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 GPR65Q8IYL9 337 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 PIK3R5Q8WYR1 880 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 ZNF396Q96N95 335 aaPredicted RBP20.82■□□□□ 0.92
SF3A1-202ENST00000411423 TTPALQ9BTX7 342 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 C1QTNF1Q9BXJ1 281 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 ST6GALNAC4Q9H4F1 302 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 SFXN1Q9H9B4 322 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 DAXXQ9UER7 740 aaPredicted RBP20.82■□□□□ 0.92
SF3A1-202ENST00000411423 ZDHHC9Q9Y397 364 aa20.82■□□□□ 0.92
SF3A1-202ENST00000411423 A0A0B4J269 797 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 C2CD4DB7Z1M9 353 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 PODXLO00592 558 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 HNRNPDLO14979 420 aaKnown RBP20.81■□□□□ 0.92
SF3A1-202ENST00000411423 GPR37L1O60883 481 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 GLUD1P00367 558 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 FGFR3P22607 806 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 TKTP29401 623 aaKnown RBP20.81■□□□□ 0.92
SF3A1-202ENST00000411423 TXLNAP40222 546 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 STAT6P42226 847 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 MATR3P43243 847 aaKnown RBP eCLIP20.81■□□□□ 0.92
SF3A1-202ENST00000411423 CASP5P51878 434 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 CCDC73Q6ZRK6 1079 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 ZNF720Q7Z2F6 126 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 UROC1Q96N76 676 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 TBC1D7Q9P0N9 293 aa20.81■□□□□ 0.92
SF3A1-202ENST00000411423 TTC26A0AVF1 554 aa20.8■□□□□ 0.92
SF3A1-202ENST00000411423 MTHFRP42898 656 aa20.8■□□□□ 0.92
SF3A1-202ENST00000411423 ENOX2Q16206 610 aaKnown RBP20.8■□□□□ 0.92
SF3A1-202ENST00000411423 PSMD5Q16401 504 aa20.8■□□□□ 0.92
SF3A1-202ENST00000411423 ZNF707Q96C28 371 aaPredicted RBP20.8■□□□□ 0.92
SF3A1-202ENST00000411423 TSHZ2Q9NRE2 1034 aa20.8■□□□□ 0.92
SF3A1-202ENST00000411423 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.8■□□□□ 0.92
SF3A1-202ENST00000411423 FRMD3A2A2Y4 597 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 LACTBL1A8MY62 500 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 OGTO15294 1046 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 CLTAP09496 248 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 ALADP13716 330 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 GUCY2FP51841 1108 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 DNM1Q05193 864 aaKnown RBP20.79■□□□□ 0.92
SF3A1-202ENST00000411423 ZBTB6Q15916 424 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 TMEM31Q5JXX7 168 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.79■□□□□ 0.92
SF3A1-202ENST00000411423 DDX27Q96GQ7 796 aaKnown RBP20.79■□□□□ 0.92
SF3A1-202ENST00000411423 RIPOR3Q96MK2 946 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 NECTIN4Q96NY8 510 aa20.79■□□□□ 0.92
SF3A1-202ENST00000411423 CCDC195A0A1B0GUA6 201 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 CUTAO60888 179 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 PAPLNO95428 1278 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 ADRB2P07550 413 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 COL9A1P20849 921 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 ATAT1Q5SQI0 421 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 GLIS3Q8NEA6 775 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 ZSWIM2Q8NEG5 633 aa20.78■□□□□ 0.92
SF3A1-202ENST00000411423 CMASQ8NFW8 434 aaPredicted RBP20.78■□□□□ 0.92
SF3A1-202ENST00000411423 MSTO1Q9BUK6 570 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms