RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZNF75DP51815 510 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 MCCD1P59942 119 aaPredicted RBP19.55■□□□□ 0.72
SDC1-203ENST00000403076 NR1I3Q14994 352 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 GLRA4Q5JXX5 417 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 KRT39Q6A163 491 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 GLB1LQ6UWU2 654 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 ALKAL1Q6UXT8 129 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 ZNF365Q70YC5 407 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 OTOP2Q7RTS6 562 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 NT5DC4Q86YG4 428 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 OR5B17Q8NGF7 314 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 ZNF516Q92618 1163 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 FAM84AQ96KN4 292 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 TMEM8AQ9HCN3 771 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 CNTN3Q9P232 1028 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 INPP5FQ9Y2H2 1132 aa19.55■□□□□ 0.72
SDC1-203ENST00000403076 SMIM28A0A1B0GU29 152 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 ZBBXA8MT70 800 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 UPP2O95045 317 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 ADCY5O95622 1261 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 AMHP03971 560 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 KCNJ6P48051 423 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 CLDN10P78369 228 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 MYL7Q01449 175 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.54■□□□□ 0.725e-7■□□□□ 10.8
SDC1-203ENST00000403076 SV2AQ7L0J3 742 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 EFCAB13Q8IY85 973 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 PCMTD1Q96MG8 357 aaPredicted RBP19.54■□□□□ 0.72
SDC1-203ENST00000403076 ZFP42Q96MM3 310 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 MTMR12Q9C0I1 747 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 TMEM117Q9H0C3 514 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 CXCL16Q9H2A7 254 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 DERAQ9Y315 318 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 R3HCC1Q9Y3T6 440 aaKnown RBP19.54■□□□□ 0.72
SDC1-203ENST00000403076 C2CD2Q9Y426 696 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 CITO14578 2027 aa19.54■□□□□ 0.72
SDC1-203ENST00000403076 PTPRJQ12913 1337 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 ARL5CA6NH57 179 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 XPOTO43592 962 aaKnown RBP19.53■□□□□ 0.72
SDC1-203ENST00000403076 BAIAP3O94812 1187 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 CLSTN1O94985 981 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 KCNE1P15382 129 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 CBWD6Q4V339 395 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 CBWD3Q5JTY5 395 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 CBWD5Q5RIA9 395 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 PSRC1Q6PGN9 363 aaPredicted RBP19.53■□□□□ 0.72
SDC1-203ENST00000403076 C16orf59Q7L2K0 433 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 NPAS4Q8IUM7 802 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 ABI1Q8IZP0 508 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 BEST2Q8NFU1 509 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 HELQQ8TDG4 1101 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 TSPAN18Q96SJ8 248 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 CRACR2AQ9BSW2 395 aa19.53■□□□□ 0.72
SDC1-203ENST00000403076 P4HA2O15460 535 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 HOXA2O43364 376 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 THP07101 528 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 FGFR1P11362 822 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 SCNN1GP51170 649 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 PTPN21Q16825 1174 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 XKR4Q5GH76 650 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 GBP6Q6ZN66 633 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 TRAPPC11Q7Z392 1133 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 URGCPQ8TCY9 931 aa19.52■□□□□ 0.72
SDC1-203ENST00000403076 ZMAT2Q96NC0 199 aaKnown RBP19.52■□□□□ 0.72
SDC1-203ENST00000403076 UBQLN1Q9UMX0 589 aaKnown RBP19.52■□□□□ 0.72
SDC1-203ENST00000403076 PTGESO14684 152 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 OFD1O75665 1012 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 POMCP01189 267 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 C4BPAP04003 597 aaKnown RBP19.51■□□□□ 0.71
SDC1-203ENST00000403076 WDR5P61964 334 aaKnown RBP19.51■□□□□ 0.71
SDC1-203ENST00000403076 TRPC3Q13507 836 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 SYCP1Q15431 976 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 EXOC3L4Q17RC7 722 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 DRC7Q8IY82 874 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 FBXL13Q8NEE6 735 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 MRFAP1L1Q96HT8 127 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.51■□□□□ 0.71
SDC1-203ENST00000403076 SLC38A7Q9NVC3 462 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 DPP3Q9NY33 737 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 KRT19P08727 400 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 PIK3CAP42336 1068 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 EPHB4P54760 987 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 ZACNQ401N2 412 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 NOMO2Q5JPE7 1267 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 CLLU1OSQ5K130 101 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 TMEM240Q5SV17 173 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 TDRD10Q5VZ19 366 aaKnown RBP19.51■□□□□ 0.71
SDC1-203ENST00000403076 C18orf25Q96B23 403 aaPredicted RBP19.51■□□□□ 0.71
SDC1-203ENST00000403076 MIOSQ9NXC5 875 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 GCNT4Q9P109 453 aa19.51■□□□□ 0.71
SDC1-203ENST00000403076 TTC3P53804 2025 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 MICAL3Q7RTP6 2002 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 GTPBP10A4D1E9 387 aaKnown RBP19.5■□□□□ 0.71
SDC1-203ENST00000403076 HLA-DRAP01903 254 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 AFF1P51825 1210 aaKnown RBP19.5■□□□□ 0.71
SDC1-203ENST00000403076 GUCY2FP51841 1108 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 DEFB103AP81534 67 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 RNASELQ05823 741 aaKnown RBP19.5■□□□□ 0.71
SDC1-203ENST00000403076 FAM117BQ6P1L5 589 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 C15orf39Q6ZRI6 1047 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms