RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FAM122AQ96E09 287 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 DDX27Q96GQ7 796 aaKnown RBP23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 ZMAT2Q96NC0 199 aaKnown RBP23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 GOLGA2P5Q9HBQ8 144 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 CNTN3Q9P232 1028 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 ANKFY1Q9P2R3 1169 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 LIMD1Q9UGP4 676 aa23.75■■□□□ 1.39
CCDC28B-201ENST00000373602 MTCL1Q9Y4B5 1905 aaKnown RBP23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 MEFVO15553 781 aaPredicted RBP23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 HARSP12081 509 aaKnown RBP23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 FGFR3P22607 806 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 MCL1Q07820 350 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 FAM173BQ6P4H8 233 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 C3orf58Q8NDZ4 430 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 ASIC4Q96FT7 647 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 WDR6Q9NNW5 1121 aaKnown RBP23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 ZDHHC7Q9NXF8 308 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 FBXO2Q9UK22 296 aaPredicted RBP23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 MTMR6Q9Y217 621 aa23.74■■□□□ 1.39
CCDC28B-201ENST00000373602 VWA8A3KMH1 1905 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 MYO10Q9HD67 2058 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 CLDN3O15551 220 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 FAM13AO94988 1023 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 SCP2P22307 547 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 MARCKSP29966 332 aaPredicted RBP23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 MTMR3Q13615 1198 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 USP49Q70CQ1 688 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 UBALD2Q8IYN6 164 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 MYCT1Q8N699 235 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 SMG7Q92540 1137 aaKnown RBP23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 LARP4BQ92615 738 aaKnown RBP23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 EPSTI1Q96J88 318 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 PARVGQ9HBI0 331 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 FBXW11Q9UKB1 542 aa23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 SRPRBQ9Y5M8 271 aaKnown RBP23.73■■□□□ 1.39
CCDC28B-201ENST00000373602 TRAPPC3O43617 180 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 ZMYND10O75800 440 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 ASGR2P07307 311 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 DDIT3P35638 169 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 SLC10A6Q3KNW5 377 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 SPECC1Q5M775 1068 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 PRKD2Q9BZL6 878 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 HAPLN2Q9GZV7 340 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 KCNH6Q9H252 994 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 FOXD4L1Q9NU39 408 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 TBX20Q9UMR3 447 aa23.72■■□□□ 1.39
CCDC28B-201ENST00000373602 CITO14578 2027 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 CLUHO75153 1309 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 PODXLO00592 558 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 ADAM12O43184 909 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 TRAK2O60296 914 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 KRT18P05783 430 aaKnown RBP23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 RPL9P32969 192 aaKnown RBP23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 BRCC3P46736 316 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 SEZ6Q53EL9 994 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 STAMQ92783 540 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 BICD1Q96G01 975 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 MTRRQ9UBK8 725 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 MORC2Q9Y6X9 1032 aaPredicted RBP23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 ZNF318Q5VUA4 2279 aa23.71■■□□□ 1.39
CCDC28B-201ENST00000373602 K7ENM7 598 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 PIGRP01833 764 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 RAB33AQ14088 237 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 FBXL6Q8N531 539 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 C18orf25Q96B23 403 aaPredicted RBP23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 CLIC6Q96NY7 704 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 FIZ1Q96SL8 496 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 ZSCAN16Q9H4T2 348 aaPredicted RBP23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 PIDD1Q9HB75 910 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 CCDC39Q9UFE4 941 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 BACE2Q9Y5Z0 518 aa23.7■■□□□ 1.38
CCDC28B-201ENST00000373602 I3L4J1 428 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 STX6O43752 255 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 N4BP1O75113 896 aaKnown RBP23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 TBCAO75347 108 aaKnown RBP23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 CLTAP09496 248 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 TKTP29401 623 aaKnown RBP23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 MATR3P43243 847 aaKnown RBP eCLIP23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 LIG4P49917 911 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 CEBPZQ03701 1054 aaKnown RBP23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 SUGP1Q8IWZ8 645 aaKnown RBP23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 SNX21Q969T3 373 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 USP28Q96RU2 1077 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 ZHX3Q9H4I2 956 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 PLEKHA5Q9HAU0 1116 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 STK17AQ9UEE5 414 aa23.69■■□□□ 1.38
CCDC28B-201ENST00000373602 HNRNPDLO14979 420 aaKnown RBP23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 CXCL8P10145 99 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 OR1D2P34982 312 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 GTF2BQ00403 316 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 SLC39A14Q15043 492 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 LIN9Q5TKA1 542 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 ANKS3Q6ZW76 656 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 SMOC2Q9H3U7 446 aa23.68■■□□□ 1.38
CCDC28B-201ENST00000373602 TTC26A0AVF1 554 aa23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 C8AP07357 584 aa23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 HNRNPA1P09651 372 aaKnown RBP eCLIP23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 GBP2P32456 591 aaPredicted RBP23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 ABCD1P33897 745 aa23.67■■□□□ 1.38
CCDC28B-201ENST00000373602 KYAT1Q16773 422 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms