RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CLEC17AQ6ZS10 378 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 TMC6Q7Z403 805 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ECHDC2Q86YB7 292 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 RNF139Q8WU17 664 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 TSGA10Q9BZW7 698 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 AGPAT3Q9NRZ7 376 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ZNF236Q9UL36 1845 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 CDK5RAP2Q96SN8 1893 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 RBBP6Q7Z6E9 1792 aaKnown RBP9.87□□□□□ -0.83
UPF2-202ENST00000357604 GRIK1P39086 918 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 GLUD2P49448 558 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ACOT2P49753 483 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ZNF365Q70YC5 407 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 RIPOR3Q96MK2 946 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ST6GALNAC4Q9H4F1 302 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.87□□□□□ -0.83
UPF2-202ENST00000357604 RGS20O76081 388 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ABL1P00519 1130 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 POMCP01189 267 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ENOX2Q16206 610 aaKnown RBP9.87□□□□□ -0.83
UPF2-202ENST00000357604 CHRDL2Q6WN34 429 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 BRSK2Q8IWQ3 736 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 DBF4BQ8NFT6 615 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 TUBGCP2Q9BSJ2 902 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 VPS16Q9H269 839 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 C2CD2Q9Y426 696 aa9.87□□□□□ -0.83
UPF2-202ENST00000357604 ZSCAN12O43309 604 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 PRR29P0C7W0 189 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 MLH1P40692 756 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 KIF11P52732 1056 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 KRT83P78385 493 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 ZC2HC1CQ53FD0 456 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 HERVK_113Q902F9 699 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 KAT2BQ92831 832 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 HPDLQ96IR7 371 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CYP3A43Q9HB55 503 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 NFE2Q16621 373 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 ARHGAP44Q17R89 818 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 FAM228AQ86W67 206 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CYB561D2O14569 222 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 AKR1B10O60218 316 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 PRCPP42785 496 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CYP24A1Q07973 514 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 MTA1Q13330 715 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 TUSC3Q13454 348 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 NCOA4Q13772 614 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 TDRD10Q5VZ19 366 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 CDCA2Q69YH5 1023 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 SCARA5Q6ZMJ2 495 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 KSR1Q8IVT5 923 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 SLITRK6Q9H5Y7 841 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 LSM7Q9UK45 103 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 SIPA1L1O43166 1804 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 OR6C75A6NL08 312 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 SYN3O14994 580 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 RECQL4O94761 1208 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 COPB1P53618 953 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 AMPD2Q01433 879 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CAP1Q01518 475 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 FAAP100Q0VG06 881 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 GSE1Q14687 1217 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 PREPLQ4J6C6 727 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 ADGRF2Q8IZF7 708 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 TMEM161BQ8NDZ6 487 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 DHX38Q92620 1227 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 INTS2Q9H0H0 1204 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 MBLAC1A4D2B0 266 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 TRIM66O15016 1216 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 B3GAT3O94766 335 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CSF2RAP15509 400 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 GNL1P36915 607 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 CYP27A1Q02318 531 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 YWHAHQ04917 246 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 NPY5RQ15761 445 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 SGO2Q562F6 1265 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 COL13A1Q5TAT6 717 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 CCDC181Q5TID7 509 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 SCN4BQ8IWT1 228 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CALR3Q96L12 384 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 ZNF512Q96ME7 567 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 PCYT2Q99447 389 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 CDCA3Q99618 268 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 FAM124BQ9H5Z6 455 aaPredicted RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 NGRNQ9NPE2 291 aaKnown RBP9.86□□□□□ -0.83
UPF2-202ENST00000357604 DZANK1Q9NVP4 752 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 KIAA1257Q9ULG3 409 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 STRIP2Q9ULQ0 834 aa9.86□□□□□ -0.83
UPF2-202ENST00000357604 TUFMP49411 452 aaKnown RBP9.85□□□□□ -0.83
UPF2-202ENST00000357604 NDUFV1P49821 464 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 SCNN1GP51170 649 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 MCL1Q07820 350 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 PSMD6Q15008 389 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 FAM171A1Q5VUB5 890 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 SPATA18Q8TC71 538 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 C2orf15Q8WU43 125 aaKnown RBP9.85□□□□□ -0.83
UPF2-202ENST00000357604 ARNTL2Q8WYA1 636 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 UBE2TQ9NPD8 197 aaPredicted RBP9.85□□□□□ -0.83
UPF2-202ENST00000357604 BLOC1S4Q9NUP1 217 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 HPSEQ9Y251 543 aa9.85□□□□□ -0.83
UPF2-202ENST00000357604 PCDHB5Q9Y5E4 795 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms