RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 ARL2P36404 184 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 COILP38432 576 aaPredicted RBP23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 PLTPP55058 493 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 IFFO1Q0D2I5 559 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 MCOLN2Q8IZK6 566 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 ANKRD35Q8N283 1001 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 BTBD6Q96KE9 485 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 PABPC3Q9H361 631 aaKnown RBP23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 FBXO40Q9UH90 709 aa23.82■■□□□ 1.4
NKX2-1-201ENST00000354822 HLA-DRAP01903 254 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 RFC5P40937 340 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 PMS2P54278 862 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 CORO7P57737 925 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 GUCY1A3Q02108 690 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 SPATS2Q86XZ4 545 aaKnown RBP23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 MAIP1Q8WWC4 291 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 TMEM143Q96AN5 459 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 POLR2AP24928 1970 aaKnown RBP23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 IGKV6D-21A0A0A0MT36 114 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 NUDT17P0C025 328 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 GLRA2P23416 452 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 PPP1R2P3Q6NXS1 205 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 ZDHHC24Q6UX98 284 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 TRIM72Q6ZMU5 477 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 CROCCP2Q86T23 111 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 HOOK3Q86VS8 718 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 CCDC105Q8IYK2 499 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 ZDHHC14Q8IZN3 488 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 TMEM134Q9H6X4 195 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 LRRC19Q9H756 370 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 NRBP2Q9NSY0 501 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 SBF1O95248 1867 aa23.81■■□□□ 1.4
NKX2-1-201ENST00000354822 WDR90Q96KV7 1748 aa23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 USP2O75604 605 aaPredicted RBP23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 PIK3CAP42336 1068 aa23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 NLRP11P59045 1033 aaKnown RBP23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 SKIDA1Q1XH10 827 aa23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 KRT71Q3SY84 523 aa23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 ODF2Q5BJF6 829 aa23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 ANAPC7Q9UJX3 599 aa23.8■■□□□ 1.4
NKX2-1-201ENST00000354822 FSCN2O14926 492 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 POTEJP0CG39 1038 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 RARAP10276 462 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 HPDP32754 393 aaPredicted RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 PTGISQ16647 500 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 TDRD10Q5VZ19 366 aaKnown RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 TTC27Q6P3X3 843 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 FBXO25Q8TCJ0 367 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 ASAP3Q8TDY4 903 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 RBAKQ9NYW8 714 aaPredicted RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 GRHL1Q9NZI5 618 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 BCCIPQ9P287 314 aaKnown RBP eCLIP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 DOCK5Q9H7D0 1870 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 PASKQ96RG2 1323 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 LRRIQ4A6NIV6 560 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 SORBS3O60504 671 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 CYP1A1P04798 512 aaPredicted RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 NSFP46459 744 aaKnown RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 ACOT2P49753 483 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 IRX5P78411 483 aaPredicted RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 CENPCQ03188 943 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 CRELD2Q6UXH1 353 aaPredicted RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 SLCO2A1Q92959 643 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 RASSF4Q9H2L5 321 aa23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 FEZ2Q9UHY8 353 aaPredicted RBP23.79■■□□□ 1.4
NKX2-1-201ENST00000354822 TBXAS1P24557 533 aaPredicted RBP23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 RPL21P46778 160 aaKnown RBP23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 PPP2R2AP63151 447 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 SLMAPQ14BN4 828 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 SIX1Q15475 284 aaPredicted RBP23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 SEPT14Q6ZU15 432 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 VCPIP1Q96JH7 1222 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 ALDH5A1P51649 535 aaPredicted RBP23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 CDR1P51861 262 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 CUL2Q13617 745 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 PRKG1Q13976 671 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 LIN9Q5TKA1 542 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 DENND2CQ68D51 928 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 LBX2Q6XYB7 198 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 MSTO1Q9BUK6 570 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 NOVA2Q9UNW9 492 aaKnown RBP23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 PPME1Q9Y570 386 aa23.78■■□□□ 1.4
NKX2-1-201ENST00000354822 A0A0B4J269 797 aa23.77■■□□□ 1.4
NKX2-1-201ENST00000354822 MAN1A1P33908 653 aa23.77■■□□□ 1.4
NKX2-1-201ENST00000354822 C10orf67Q8IYJ2 551 aa23.77■■□□□ 1.4
NKX2-1-201ENST00000354822 CEP89Q96ST8 783 aa23.77■■□□□ 1.4
NKX2-1-201ENST00000354822 ECEL1O95672 775 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 ACO1P21399 889 aaKnown RBP23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 MAGEA9P43362 315 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 AP3M2P53677 418 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 CNTN2Q02246 1040 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 NEDD9Q14511 834 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 FAM160B1Q5W0V3 765 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 LMBRD2Q68DH5 695 aaPredicted RBP23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 RIOX2Q8IUF8 465 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 C3orf20Q8ND61 904 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 ELMO3Q96BJ8 720 aa23.76■■□□□ 1.39
NKX2-1-201ENST00000354822 CGRRF1Q99675 332 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms