RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BCAR1P56945 870 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 FKBP3Q00688 224 aaKnown RBP24.05■■□□□ 1.44
SHMT1-203ENST00000354098 ZBTB6Q15916 424 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 STX1AQ16623 288 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 C11orf57Q6ZUT1 292 aaPredicted RBP24.05■■□□□ 1.44
SHMT1-203ENST00000354098 EFCAB13Q8IY85 973 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 PLEKHO2Q8TD55 490 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 PAAF1Q9BRP4 392 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 ANO10Q9NW15 660 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 FRMD4BQ9Y2L6 1034 aa24.05■■□□□ 1.44
SHMT1-203ENST00000354098 TDRD15B5MCY1 1934 aaKnown RBP24.04■■□□□ 1.44
SHMT1-203ENST00000354098 CASTOR2A6NHX0 329 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 CETN3O15182 167 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 LETM1O95202 739 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-203ENST00000354098 ZSCAN23Q3MJ62 389 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 COLGALT1Q8NBJ5 622 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 CCDC127Q96BQ5 260 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 TGS1Q96RS0 853 aaKnown RBP24.04■■□□□ 1.44
SHMT1-203ENST00000354098 POP1Q99575 1024 aaKnown RBP24.04■■□□□ 1.44
SHMT1-203ENST00000354098 GZF1Q9H116 711 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-203ENST00000354098 TUBGCP4Q9UGJ1 667 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 DACH1Q9UI36 760 aa24.04■■□□□ 1.44
SHMT1-203ENST00000354098 GALTP07902 379 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 BMPR1AP36894 532 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 SLC11A1P49279 550 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 GUCY2FP51841 1108 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 ERVK-21P61565 698 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 TUSC3Q13454 348 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 LMBRD2Q68DH5 695 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-203ENST00000354098 KCNT2Q6UVM3 1135 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 CSGALNACT2Q8N6G5 542 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 ANK1P16157 1881 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 RALGAPA2Q2PPJ7 1873 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 KIAA1671Q9BY89 1806 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 PTPRJQ12913 1337 aa24.03■■□□□ 1.44
SHMT1-203ENST00000354098 F8W810 466 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 LAG3P18627 525 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 IGFBP6P24592 240 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 CTNNB1P35222 781 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 PSMC2P35998 433 aaKnown RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 TMEM132DQ14C87 1099 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 PSMD6Q15008 389 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 EPC2Q52LR7 807 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 FOXR2Q6PJQ5 311 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 FAM186BQ8IYM0 893 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 FUCA2Q9BTY2 467 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 DNAJC25Q9H1X3 360 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 ZNF576Q9H609 170 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 CDH23Q9H251 3354 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 NRP1O14786 923 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 ALDH2P05091 517 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 DLATP10515 647 aaKnown RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 ERCC5P28715 1186 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 OR1G1P47890 313 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 ALDH7A1P49419 539 aaKnown RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 TMEM173Q86WV6 379 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 ARNTL2Q8WYA1 636 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 ZNF558Q96NG5 402 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 SRRTQ9BXP5 876 aaKnown RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 TTYH1Q9H313 450 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-203ENST00000354098 SLC38A7Q9NVC3 462 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 DERAQ9Y315 318 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 C2CD2Q9Y426 696 aa24.02■■□□□ 1.44
SHMT1-203ENST00000354098 CHD7Q9P2D1 2997 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 CLCNKBP51801 687 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 DLG4P78352 724 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 TFAMQ00059 246 aaKnown RBP24.01■■□□□ 1.43
SHMT1-203ENST00000354098 PARD3BQ8TEW8 1205 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 BORCS6Q96GS4 357 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 TMEM175Q9BSA9 504 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 AAASQ9NRG9 546 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 UBQLN1Q9UMX0 589 aaKnown RBP24.01■■□□□ 1.43
SHMT1-203ENST00000354098 FAN1Q9Y2M0 1017 aa24.01■■□□□ 1.43
SHMT1-203ENST00000354098 PRG3Q9Y2Y8 225 aaPredicted RBP24.01■■□□□ 1.43
SHMT1-203ENST00000354098 SZT2Q5T011 3432 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 EPOPA6NHQ4 379 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 MAPK13O15264 365 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 HSP90AA2PQ14568 343 aaPredicted RBP24■■□□□ 1.43
SHMT1-203ENST00000354098 SPATA1Q5VX52 437 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 SCARA3Q6AZY7 606 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 KLHL23Q8NBE8 558 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 OR5B17Q8NGF7 314 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 BCL7CQ8WUZ0 217 aaPredicted RBP24■■□□□ 1.43
SHMT1-203ENST00000354098 CEP63Q96MT8 703 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 TSPAN18Q96SJ8 248 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 PCDHB12Q9Y5F1 795 aa24■■□□□ 1.43
SHMT1-203ENST00000354098 PDCD11Q14690 1871 aaKnown RBP24■■□□□ 1.43
SHMT1-203ENST00000354098 CCDC192P0DO97 292 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 SURF1Q15526 300 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 ANO6Q4KMQ2 910 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 CT47A1Q5JQC4 288 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-203ENST00000354098 FILIP1Q7Z7B0 1213 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 SLC39A11Q8N1S5 342 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 ZNF516Q92618 1163 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 FNBP1Q96RU3 617 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 MKNK1Q9BUB5 465 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 RWDD3Q9Y3V2 267 aa23.99■■□□□ 1.43
SHMT1-203ENST00000354098 LRRIQ3A6PVS8 624 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-203ENST00000354098 EPB41P11171 864 aaKnown RBP23.99■■□□□ 1.43
SHMT1-203ENST00000354098 TNNI1P19237 187 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms