RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PSMD6Q15008 389 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 TTC31Q49AM3 519 aaPredicted RBP20.72■□□□□ 0.91
COL9A3-201ENST00000343916 DAB2IPQ5VWQ8 1189 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 EEPD1Q7L9B9 569 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 SLC13A5Q86YT5 568 aaPredicted RBP20.72■□□□□ 0.91
COL9A3-201ENST00000343916 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.72■□□□□ 0.913e-8■■■■□ 19.8
COL9A3-201ENST00000343916 DEPTORQ8TB45 409 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 FBXO40Q9UH90 709 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 DCDC2CA8MYV0 355 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 VNN1O95497 513 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 C4BPAP04003 597 aaKnown RBP20.72■□□□□ 0.91
COL9A3-201ENST00000343916 HARSP12081 509 aaKnown RBP20.72■□□□□ 0.91
COL9A3-201ENST00000343916 CLUL1Q15846 466 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 ZDHHC24Q6UX98 284 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 C1orf131Q8NDD1 294 aaKnown RBP20.72■□□□□ 0.91
COL9A3-201ENST00000343916 SLC7A3Q8WY07 619 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 BTBD7Q9P203 1132 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 MYPNQ86TC9 1320 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 PPFIA2O75334 1257 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 ATG7O95352 703 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 RARAP10276 462 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 UBA1P22314 1058 aaKnown RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 RRM1P23921 792 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 LSP1P33241 339 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 RPL21P46778 160 aaKnown RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 CLDN10P78369 228 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 DRP2Q13474 957 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 VGLL4Q14135 290 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 WDR44Q5JSH3 913 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 MORC4Q8TE76 937 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 TXLNGYQ9BZA5 131 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 RBAKQ9NYW8 714 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 GRHL1Q9NZI5 618 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 H0YCG3 227 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 CLDN3O15551 220 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 ZC3H11AO75152 810 aaKnown RBP eCLIP20.71■□□□□ 0.914e-8■■□□□ 14.3
COL9A3-201ENST00000343916 USP2O75604 605 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 SCP2P22307 547 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 MAPK4P31152 587 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 ALDH5A1P51649 535 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 RWDD2BP57060 319 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 SIX1Q15475 284 aaPredicted RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 ENOSF1Q7L5Y1 443 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 PASD1Q8IV76 773 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 CCDC105Q8IYK2 499 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 MCOLN2Q8IZK6 566 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 PLCD3Q8N3E9 789 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 PCYT2Q99447 389 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 R3HDMLQ9H3Y0 253 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 APOBEC3GQ9HC16 384 aaKnown RBP20.71■□□□□ 0.91
COL9A3-201ENST00000343916 PCYOX1Q9UHG3 505 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 RASAL2Q9UJF2 1139 aa20.71■□□□□ 0.91
COL9A3-201ENST00000343916 TTLL13PA6NNM8 815 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 HSPA6P17066 643 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 UBAP2Q5T6F2 1119 aaKnown RBP20.7■□□□□ 0.9
COL9A3-201ENST00000343916 EMC10Q5UCC4 262 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 DNERQ8NFT8 737 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 CYFIP2Q96F07 1278 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 CEP89Q96ST8 783 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 MSTO1Q9BUK6 570 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 KIAA1586Q9HCI6 787 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.7■□□□□ 0.9
COL9A3-201ENST00000343916 PCDHB2Q9Y5E7 798 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 STYXL1Q9Y6J8 313 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 PCNTO95613 3336 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 MROH7Q68CQ1 1323 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 SHBGP04278 402 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 ICAM3P32942 547 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 ARL2P36404 184 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 MDH1P40925 334 aaKnown RBP20.7■□□□□ 0.9
COL9A3-201ENST00000343916 NAMPTP43490 491 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 SEC24CP53992 1094 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 KRT71Q3SY84 523 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 EPB41L4BQ9H329 900 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 EFCC1Q9HA90 598 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 NOVA2Q9UNW9 492 aaKnown RBP20.7■□□□□ 0.9
COL9A3-201ENST00000343916 SNCAIPQ9Y6H5 919 aa20.7■□□□□ 0.9
COL9A3-201ENST00000343916 NDUFAB1O14561 156 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 NOL9Q5SY16 702 aaKnown RBP20.69■□□□□ 0.9
COL9A3-201ENST00000343916 RUFY4Q6ZNE9 571 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 CHST13Q8NET6 341 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 OR5B17Q8NGF7 314 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 UMODL1Q5DID0 1318 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 GSTTP1A0A1W2PQM5 241 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 FARP2O94887 1054 aaPredicted RBP20.69■□□□□ 0.9
COL9A3-201ENST00000343916 COILP38432 576 aaPredicted RBP20.69■□□□□ 0.9
COL9A3-201ENST00000343916 IFFO1Q0D2I5 559 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 ODF2Q5BJF6 829 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 TMEM270Q6UE05 265 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 LBX2Q6XYB7 198 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 PPM1EQ8WY54 764 aa20.69■□□□□ 0.9
COL9A3-201ENST00000343916 NCAPG2Q86XI2 1143 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 C1orf54Q8WWF1 131 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 MTUS1Q9ULD2 1270 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 A6NNZ2 444 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 EBAG9O00559 213 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 GGPS1O95749 300 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 ACO1P21399 889 aaKnown RBP20.68■□□□□ 0.9
COL9A3-201ENST00000343916 TMOD1P28289 359 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 NSFP46459 744 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms