RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 F6X3S4 739 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 GRM6O15303 877 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 TOX3O15405 576 aaPredicted RBP1.83□□□□□ -2.12
LINC00643-201ENST00000334389 HNRNPRO43390 633 aaKnown RBP1.83□□□□□ -2.12
LINC00643-201ENST00000334389 FIBPO43427 364 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 FGF18O76093 207 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 ANKRD34CP0C6C1 535 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 SYN1P17600 705 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 KCNA5P22460 613 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 DNAJB1P25685 340 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 TSPAN7P41732 249 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 LEPRP48357 1165 aaKnown RBP1.83□□□□□ -2.12
LINC00643-201ENST00000334389 AP1B1Q10567 949 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 ASPRV1Q53RT3 343 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 PRR31Q5SQ13 230 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 WDR78Q5VTH9 848 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 GDF6Q6KF10 455 aaPredicted RBP1.83□□□□□ -2.12
LINC00643-201ENST00000334389 KLHDC10Q6PID8 442 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 SEZ6L2Q6UXD5 910 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 ADAMTSL4Q6UY14 1074 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 LRRC69Q6ZNQ3 347 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 TMC7Q7Z402 723 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 ARHGAP30Q7Z6I6 1101 aaPredicted RBP1.83□□□□□ -2.12
LINC00643-201ENST00000334389 IRF2BP1Q8IU81 584 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 KIAA0825Q8IV33 1275 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 SHISA5Q8N114 240 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 CEP120Q8N960 986 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 IGSF21Q96ID5 467 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 SPACA7Q96KW9 195 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 PRIMPOLQ96LW4 560 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 GRIP2Q9C0E4 1043 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 ADAMTS10Q9H324 1103 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 PANK3Q9H999 370 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 ASCL3Q9NQ33 180 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 FAM217BQ9NTX9 383 aaPredicted RBP1.83□□□□□ -2.12
LINC00643-201ENST00000334389 PDP2Q9P2J9 529 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 PILRAQ9UKJ1 303 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 FZD4Q9ULV1 537 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 AKAP9Q99996 3911 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 CNTNAP5Q8WYK1 1306 aa1.83□□□□□ -2.12
LINC00643-201ENST00000334389 UBR5O95071 2799 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 NCOR1O75376 2440 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 E2F8A0AVK6 867 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 RNF223E7ERA6 249 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 NVLO15381 856 aaKnown RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ALDH1A2O94788 518 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ARIH2O95376 493 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 CIITAP33076 1130 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 DCTP40126 519 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 MAGEA11P43364 429 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ACADVLP49748 655 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 COL10A1Q03692 680 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 FOXM1Q08050 763 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF235Q14590 738 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 TARBP2Q15633 366 aaKnown RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 MEA1Q16626 185 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 COL28A1Q2UY09 1125 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 BBS9Q3SYG4 887 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 EOGTQ5NDL2 527 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 USP53Q70EK8 1073 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 MED25Q71SY5 747 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 APBB1IPQ7Z5R6 666 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 NLRP8Q86W28 1048 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 AMOTL1Q8IY63 956 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 IGFBPL1Q8WX77 278 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 SPATA17Q96L03 361 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 NECAB3Q96P71 396 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 LENG8Q96PV6 779 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 TTLL2Q9BWV7 592 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 XPO4Q9C0E2 1151 aaKnown RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 CHMP4BQ9H444 224 aaKnown RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 LY9Q9HBG7 655 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ZNF334Q9HCZ1 680 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 GPCPD1Q9NPB8 672 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 RBM28Q9NW13 759 aaKnown RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 BARHL2Q9NY43 387 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 TSPYL4Q9UJ04 414 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 SALL4Q9UJQ4 1053 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 PCDHGB3Q9Y5G1 929 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 UBIAD1Q9Y5Z9 338 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 MAST4O15021 2626 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 MYH9P35579 1960 aaKnown RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 SMCHD1A6NHR9 2005 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ZDBF2Q9HCK1 2354 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ANKRD11Q6UB99 2663 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 A0A0U1RQS6 177 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 MYADML2A6NDP7 307 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 H7C4K7 107 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 NTN3O00634 580 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 WNT9AO14904 365 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 VILLO15195 856 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 TIMM44O43615 452 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 DKC1O60832 514 aaKnown RBP eCLIP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 OPHN1O60890 802 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 FRAT2O75474 233 aaPredicted RBP1.82□□□□□ -2.12
LINC00643-201ENST00000334389 SOX30O94993 753 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 ITGB5P18084 799 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 NR1D1P20393 614 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 CYP2B6P20813 491 aa1.82□□□□□ -2.12
LINC00643-201ENST00000334389 RPL9P32969 192 aaKnown RBP1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms