RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 USP17L18D6R9N7 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L22D6RA61 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L17D6RBQ6 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L19D6RCP7 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L20D6RJB6 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 TRIM49P0CI25 452 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 TRIM49CP0CI26 452 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 DEFA1P59665 94 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 DEFA3P59666 94 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L24Q0WX57 530 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 HIC1Q14526 733 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 SUPT20HL1Q3ZLR7 823 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP17L6PQ6QN14 398 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 LRRC34Q8IZ02 419 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CDYLQ9Y232 598 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 NEDD4P46934 1319 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 MTMR1Q13613 665 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CCDC157Q569K6 752 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ARHGEF25Q86VW2 580 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ATP11CQ8NB49 1132 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 SLC10A4Q96EP9 437 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 SLAIN2Q9P270 581 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 RNF123Q5XPI4 1314 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 NUMBP49757 651 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ATP1A4Q13733 1029 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 FAM102AQ5T9C2 384 aaPredicted RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 USP33Q8TEY7 942 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 RMDN3Q96TC7 470 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 FAM217BQ9NTX9 383 aaPredicted RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 MYO1DO94832 1006 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 INSRP06213 1382 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CAPN1P07384 714 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 KIZQ2M2Z5 673 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 OSBP2Q969R2 916 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 C20orf96Q9NUD7 363 aaPredicted RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 LIMA1Q9UHB6 759 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 ADGRG1Q9Y653 693 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 C5orf58C9J3I9 102 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 F8W8V4 182 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ATP9BO43861 1147 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 HSPA1AP0DMV8 641 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 HSPA1BP0DMV9 641 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 RASGRF1Q13972 1273 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CHP1Q99653 195 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 PIH1D3Q9NQM4 214 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 CSE1LP55060 971 aaKnown RBP8.31□□□□□ -1.08
CIITA-201ENST00000324288 KRT39Q6A163 491 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 CHSY1Q86X52 802 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 ASNSD1Q9NWL6 643 aa8.31□□□□□ -1.08
CIITA-201ENST00000324288 HSMCR30P0CW71 290 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 UBE3CQ15386 1083 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CCDC137Q6PK04 289 aaKnown RBP8.3□□□□□ -1.08
CIITA-201ENST00000324288 STX19Q8N4C7 294 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 ZIM3Q96PE6 472 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 IPPQ9Y573 584 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 ANGPT2O15123 496 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 NFKBIAP25963 317 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CAV1Q03135 178 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 KCNH2Q12809 1159 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 KRT72Q14CN4 511 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 SNRNP48Q6IEG0 339 aaKnown RBP8.3□□□□□ -1.08
CIITA-201ENST00000324288 DDHD1Q8NEL9 900 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 COASYQ13057 564 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 TBC1D9BQ66K14 1250 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 PRCCQ92733 491 aaPredicted RBP8.3□□□□□ -1.08
CIITA-201ENST00000324288 NARS2Q96I59 477 aaKnown RBP8.3□□□□□ -1.08
CIITA-201ENST00000324288 RTTNQ86VV8 2226 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 APOL1O14791 398 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 SASH1O94885 1247 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CACNA2D1P54289 1103 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 LAMC2Q13753 1193 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 C16orf72Q14CZ0 275 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 ROGDIQ9GZN7 287 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 ZFATQ9P243 1243 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CLDN3O15551 220 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CCDC22O60826 627 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 HMBSP08397 361 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CHI3L2Q15782 390 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 MRGBPQ9NV56 204 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 MCM8Q9UJA3 840 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 BLMP54132 1417 aaPredicted RBP8.3□□□□□ -1.08
CIITA-201ENST00000324288 PCSK7Q16549 785 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 SNX31Q8N9S9 440 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 URGCPQ8TCY9 931 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CDHR1Q96JP9 859 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 MKNK1Q9BUB5 465 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 TTC26A0AVF1 554 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 SERPINB2P05120 415 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 KLK7P49862 253 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 LRRC63Q05C16 580 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 MEI1Q5TIA1 1274 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 PLEKHA7Q6IQ23 1121 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 SLC44A5Q8NCS7 719 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 DPF2Q92785 391 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 PGBD4Q96DM1 585 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 TAF1DQ9H5J8 278 aaPredicted RBP8.3□□□□□ -1.08
CIITA-201ENST00000324288 TTC3P53804 2025 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 USP1O94782 785 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 CDC25CP30307 473 aa8.3□□□□□ -1.08
CIITA-201ENST00000324288 RSBN1Q5VWQ0 802 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms