RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 PPP1R9BQ96SB3 815 aa29.65■■■□□ 2.34
CTDNEP1-201ENST00000318988 TSPAN18Q96SJ8 248 aa29.65■■■□□ 2.34
CTDNEP1-201ENST00000318988 MTMR12Q9C0I1 747 aa29.65■■■□□ 2.34
CTDNEP1-201ENST00000318988 UBN1Q9NPG3 1134 aa29.65■■■□□ 2.34
CTDNEP1-201ENST00000318988 GIT1Q9Y2X7 761 aa29.65■■■□□ 2.34
CTDNEP1-201ENST00000318988 PTPRJQ12913 1337 aa29.65■■■□□ 2.34
CTDNEP1-201ENST00000318988 C4BPAP04003 597 aaKnown RBP29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 NFICP08651 508 aa29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 EFCAB13Q8IY85 973 aa29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 RPS6KC1Q96S38 1066 aa29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 FAM207AQ9NSI2 230 aaPredicted RBP29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 CNTN3Q9P232 1028 aa29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 R3HCC1Q9Y3T6 440 aaKnown RBP29.64■■■□□ 2.34
CTDNEP1-201ENST00000318988 TANC1Q9C0D5 1861 aa29.64■■■□□ 2.33
CTDNEP1-201ENST00000318988 PON1P27169 355 aa29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 PIK3CAP42336 1068 aa29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 KLK7P49862 253 aa29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 TDRD10Q5VZ19 366 aaKnown RBP29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 MFSD5Q6N075 450 aa29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 RTN4RL1Q86UN2 441 aaPredicted RBP29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 EHBP1Q8NDI1 1231 aa29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 INTS2Q9H0H0 1204 aaKnown RBP29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 RAB20Q9NX57 234 aa29.63■■■□□ 2.33
CTDNEP1-201ENST00000318988 C9IYK1 514 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 MEFVO15553 781 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 XPOTO43592 962 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 EOMESO95936 686 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 SLC9A1P19634 815 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 EPC2Q52LR7 807 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 CNKSR3Q6P9H4 555 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 ALKAL1Q6UXT8 129 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 C15orf39Q6ZRI6 1047 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 TRAPPC11Q7Z392 1133 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 RPUSD2Q8IZ73 545 aaKnown RBP29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 CCDC150Q8NCX0 1101 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 LPPQ93052 612 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 RNF216Q9NWF9 866 aaPredicted RBP29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 COQ4Q9Y3A0 265 aa29.62■■■□□ 2.33
CTDNEP1-201ENST00000318988 CCDC85CA6NKD9 419 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 ENPP3O14638 875 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 CLSTN1O94985 981 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 TRPC3Q13507 836 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 IKBKEQ14164 716 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 TAS1R2Q8TE23 839 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 LINC01599Q8WXQ3 324 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 FAM84AQ96KN4 292 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 RSAD1Q9HA92 442 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 HLA-DRAP01903 254 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 KCNE1P15382 129 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 FAM189BP81408 668 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 WDR44Q5JSH3 913 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 TRIM65Q6PJ69 517 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 C7orf61Q8IZ16 206 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 BEST2Q8NFU1 509 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 CPLX3Q8WVH0 158 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 IMPG2Q9BZV3 1241 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 PLCB1Q9NQ66 1216 aa29.61■■■□□ 2.33
CTDNEP1-201ENST00000318988 DEKP35659 375 aaKnown RBP29.6■■■□□ 2.33
CTDNEP1-201ENST00000318988 XKR4Q5GH76 650 aa29.6■■■□□ 2.33
CTDNEP1-201ENST00000318988 GLRA4Q5JXX5 417 aa29.6■■■□□ 2.33
CTDNEP1-201ENST00000318988 AGMOQ6ZNB7 445 aa29.6■■■□□ 2.33
CTDNEP1-201ENST00000318988 LRFN2Q9ULH4 789 aa29.6■■■□□ 2.33
CTDNEP1-201ENST00000318988 UBQLN1Q9UMX0 589 aaKnown RBP29.6■■■□□ 2.33
CTDNEP1-201ENST00000318988 SMIM28A0A1B0GU29 152 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 PFKMP08237 780 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 KRT19P08727 400 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 CSF2RAP15509 400 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 ATF7P17544 494 aaPredicted RBP29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 ITGB8P26012 769 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 MLH1P40692 756 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 GSDMDP57764 484 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 NCOA4Q13772 614 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 FIGNQ5HY92 759 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 CACNA2D4Q7Z3S7 1137 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 ZNF397Q8NF99 534 aaPredicted RBP29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 GAD1Q99259 594 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 DPP3Q9NY33 737 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 PCDHB7Q9Y5E2 793 aa29.59■■■□□ 2.33
CTDNEP1-201ENST00000318988 ARL5CA6NH57 179 aa29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 MEIS3P2A8K0S8 358 aa29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 ACTN1P12814 892 aa29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 TBX2Q13207 712 aaPredicted RBP29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 ZNF598Q86UK7 904 aaKnown RBP29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 ZMAT2Q96NC0 199 aaKnown RBP29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 ELAC1Q9H777 363 aaKnown RBP29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 SLC38A7Q9NVC3 462 aa29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 TMEM161AQ9NX61 479 aa29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 ITGA11Q9UKX5 1188 aa29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 GTF3C5Q9Y5Q8 519 aaPredicted RBP29.58■■■□□ 2.33
CTDNEP1-201ENST00000318988 EVI5O60447 810 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 KLHDC7AQ5VTJ3 777 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 GLB1LQ6UWU2 654 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 SEMA4DQ92854 862 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 ZFP42Q96MM3 310 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 NT5C1BQ96P26 610 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 LUC7L2Q9Y383 392 aaKnown RBP29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 CITO14578 2027 aa29.57■■■□□ 2.32
CTDNEP1-201ENST00000318988 AKR1B15C9JRZ8 316 aaPredicted RBP29.56■■■□□ 2.32
CTDNEP1-201ENST00000318988 ZC3H11AO75152 810 aaKnown RBP eCLIP29.56■■■□□ 2.32
CTDNEP1-201ENST00000318988 VNN1O95497 513 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms