RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 HNRNPH1P31943 449 aaKnown RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 CCDC149Q6ZUS6 474 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 ANKMY2Q8IV38 441 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 FMR1NBQ8N0W7 255 aaPredicted RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 EPC1Q9H2F5 836 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 B2RBV5 119 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 KCNN4O15554 427 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 RPS6P62753 249 aaKnown RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 PDAP1Q13442 181 aaKnown RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 LAMC2Q13753 1193 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 PIGOQ8TEQ8 1089 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 BTKQ06187 659 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 CCDC144BQ3MJ40 725 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 TTC39BQ5VTQ0 682 aaPredicted RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 CCDC60Q8IWA6 550 aaPredicted RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 SH2D3CQ8N5H7 860 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 FAM167AQ96KS9 214 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 PPP1R2P1Q96PQ5 205 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 CHMP2BQ9UQN3 213 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 UBAP1LF5GYI3 381 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 GRK2P25098 689 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 BEST2Q8NFU1 509 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 VPS50Q96JG6 964 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 WDR24Q96S15 920 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 RBM15Q96T37 977 aaKnown RBP eCLIP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 IMPAD1Q9NX62 359 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 TLR7Q9NYK1 1049 aaKnown RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 LONRF1Q17RB8 773 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 FAM102AQ5T9C2 384 aaPredicted RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 PRELPP51888 382 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 FAM180AQ6UWF9 173 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 ELMOD1Q8N336 334 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 APPL2Q8NEU8 664 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 DHX35Q9H5Z1 703 aaKnown RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 CAAP1Q9H8G2 361 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 GEMIN8Q9NWZ8 242 aaKnown RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 DYTNA2CJ06 578 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 TK2O00142 265 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 RASGRF1Q13972 1273 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 DOK7Q18PE1 504 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 FAM129AQ9BZQ8 928 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 UBAP1Q9NZ09 502 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 MAPRE1Q15691 268 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 CCDC81Q6ZN84 652 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 APOA4P06727 396 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 BFSP2Q13515 415 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 FRMD5Q7Z6J6 570 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 INTS2Q9H0H0 1204 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 TCOF1Q13428 1488 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 PHKA2P46019 1235 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 ANO4Q32M45 955 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 FANCEQ9HB96 536 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 PAPOLBQ9NRJ5 636 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 MARCOQ9UEW3 520 aaPredicted RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 XPO7Q9UIA9 1087 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 PSMC3P17980 439 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 COPAP53621 1224 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 OMA1Q96E52 524 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 RBBP8Q99708 897 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 ARHGEF3Q9NR81 526 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 ZC3H7BQ9UGR2 993 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 APRTP07741 180 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 NME3Q13232 169 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 RCN1Q15293 331 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 RC3H1Q5TC82 1133 aaKnown RBP14.56□□□□□ -0.08
CSPG4-201ENST00000308508 KIF2BQ8N4N8 673 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 ZBTB10Q96DT7 871 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 DFFAO00273 331 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 TRIM24O15164 1050 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 ZNF568Q3ZCX4 644 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 PI4KBQ9UBF8 816 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 PTPRKQ15262 1439 aa14.56□□□□□ -0.08
CSPG4-201ENST00000308508 SNTNA6NMZ2 147 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 TNPO2O14787 897 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 RHOBTB1O94844 696 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 HSD17B4P51659 736 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 SNAP25P60880 206 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 NECTIN1Q15223 517 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 LCORLQ8N3X6 602 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 GLMNQ92990 594 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 PDLIM2Q96JY6 352 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 MANSC1Q9H8J5 431 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 TRIM13O60858 407 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 CNGA2Q16280 664 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 ZNF786Q8N393 782 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 FAM213AQ9BRX8 229 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 DBR1Q9UK59 544 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 PDZK1P1A8MUH7 402 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 KCNK10P57789 538 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 EFL1Q7Z2Z2 1120 aaKnown RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 NEU2Q9Y3R4 380 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 WDR19Q8NEZ3 1342 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 LARGE1O95461 756 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 ARHGEF26Q96DR7 871 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 FOPNLQ96NB1 174 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 PARVBQ9HBI1 364 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 TMEM120BA0PK00 339 aa14.55□□□□□ -0.08
CSPG4-201ENST00000308508 TCN1P20061 433 aaPredicted RBP14.55□□□□□ -0.08
CSPG4-201ENST00000308508 HOXA13P31271 388 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms