RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GOLGA8RI6L899 631 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 OR6B1O95007 311 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 EYA4O95677 639 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 KRT15P19012 456 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 CA4P22748 312 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 FASTKD3Q14CZ7 662 aaKnown RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 MAPK6Q16659 721 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 CTC1Q2NKJ3 1217 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 RHBDF2Q6PJF5 856 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 SLC5A5Q92911 643 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 TRAPPC9Q96Q05 1148 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 EYA3Q99504 573 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 LRRC27Q9C0I9 530 aa14.35□□□□□ -0.11
SKA3-201ENST00000298260 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.35□□□□□ -0.11
SKA3-201ENST00000298260 DIS3Q9Y2L1 958 aaKnown RBP14.35□□□□□ -0.11
SKA3-201ENST00000298260 ZBTB39O15060 712 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 GSC2O15499 205 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 PPP1R11O60927 126 aaPredicted RBP14.34□□□□□ -0.11
SKA3-201ENST00000298260 ATP5DP30049 168 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 SLC12A3P55017 1021 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 SLC34A1Q06495 639 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 SBK1Q52WX2 424 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 TTBK2Q6IQ55 1244 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 ZC3H3Q8IXZ2 948 aaKnown RBP14.34□□□□□ -0.11
SKA3-201ENST00000298260 PCDHB18PQ96TA0 734 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 MKNK1Q9BUB5 465 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 ANAPC5Q9UJX4 755 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 MINPP1Q9UNW1 487 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 MAGEA13PA6NCF6 341 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 GYG2O15488 501 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 ZSCAN9O15535 394 aaPredicted RBP14.34□□□□□ -0.11
SKA3-201ENST00000298260 BANF1O75531 89 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 DCTN3O75935 186 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 ATP5HO75947 161 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 PABPC1LQ4VXU2 614 aaKnown RBP14.34□□□□□ -0.11
SKA3-201ENST00000298260 FAM182AQ5T1J6 154 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 LLGL2Q6P1M3 1020 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 IZUMO2Q6UXV1 221 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 SH3TC2Q8TF17 1288 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 MCUR1Q96AQ8 359 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 NMD3Q96D46 503 aaKnown RBP14.34□□□□□ -0.11
SKA3-201ENST00000298260 TTC1Q99614 292 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 TIPINQ9BVW5 301 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 SPATA16Q9BXB7 569 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 STK33Q9BYT3 514 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 DMAP1Q9NPF5 467 aaPredicted RBP14.34□□□□□ -0.11
SKA3-201ENST00000298260 MTUS1Q9ULD2 1270 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 TRAF3IP3Q9Y228 551 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 ADGRA3Q8IWK6 1321 aa14.34□□□□□ -0.11
SKA3-201ENST00000298260 TGFB1I1O43294 461 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 CDH16O75309 829 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 GCAP28676 217 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 PPP1R21Q6ZMI0 780 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 CYFIP1Q7L576 1253 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 CATSPER3Q86XQ3 398 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 FAM186BQ8IYM0 893 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 FBXO41Q8TF61 875 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 GRAMD1AQ96CP6 724 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 TRABDQ9H4I3 376 aa14.33□□□□□ -0.11
SKA3-201ENST00000298260 MYO3BQ8WXR4 1341 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 LRP5O75197 1615 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 RAD21O60216 631 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 STK10O94804 968 aaKnown RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 BAG2O95816 211 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 TAL1P17542 331 aaPredicted RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 TPP2P29144 1249 aaPredicted RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 FMO5P49326 533 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 BPIFB4P59827 614 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 OCRLQ01968 901 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 CFAP157Q5JU67 520 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 INTS5Q6P9B9 1019 aaKnown RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 VPS52Q8N1B4 723 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 PDCD7Q8N8D1 485 aaKnown RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 MAML1Q92585 1016 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 RPGRQ92834 1020 aaKnown RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 ZNF184Q99676 751 aaPredicted RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 AGPAT1Q99943 283 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 MMADHCQ9H3L0 296 aaPredicted RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 KIAA1586Q9HCI6 787 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 CCDC87Q9NVE4 849 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 HEY2Q9UBP5 337 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 EXOC1LA0A1B0GW35 172 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 MAP3K7O43318 606 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 ECE2O60344 883 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 RNASEH1O60930 286 aaKnown RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 SLURP2P0DP57 97 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 ADRA1DP25100 572 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 SERPINB3P29508 390 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 CMPK2Q5EBM0 449 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 LINC00116Q8NCU8 138 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 STMN2Q93045 179 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 AZIN2Q96A70 460 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 INTS2Q9H0H0 1204 aaKnown RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 BHMT2Q9H2M3 363 aa14.33□□□□□ -0.12
SKA3-201ENST00000298260 UBE2TQ9NPD8 197 aaPredicted RBP14.33□□□□□ -0.12
SKA3-201ENST00000298260 SPATA31A6Q5VVP1 1343 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 PLSCR1O15162 318 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 ATP6V1G1O75348 118 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 GSTA2P09210 222 aa14.32□□□□□ -0.12
SKA3-201ENST00000298260 DYNC1I2Q13409 638 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms