RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PPM1KQ8N3J5 372 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 ARRDC4Q8NCT1 418 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 SHC3Q92529 594 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 FAM212AQ96EL1 285 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 FAM84AQ96KN4 292 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 KREMEN1Q96MU8 473 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 HAUS4Q9H6D7 363 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 WBP1LQ9NX94 342 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 TRPV2Q9Y5S1 764 aa15.22■□□□□ 0.03
SS18-201ENST00000269137 GFPT2O94808 682 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 PTK2Q05397 1052 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 NCOA4Q13772 614 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 PTGISQ16647 500 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 SLC10A6Q3KNW5 377 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 DNTTIP2Q5QJE6 756 aaKnown RBP15.21■□□□□ 0.03
SS18-201ENST00000269137 TRAPPC11Q7Z392 1133 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 CD302Q8IX05 232 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 EFCAB13Q8IY85 973 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 FAM71AQ8IYT1 594 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 GLT1D1Q96MS3 346 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 ACAP3Q96P50 834 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 C1orf112Q9NSG2 853 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 PTPN22Q9Y2R2 807 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 CDY2AQ9Y6F7 541 aa15.21■□□□□ 0.03
SS18-201ENST00000269137 MROH7Q68CQ1 1323 aa15.21■□□□□ 0.02
SS18-201ENST00000269137 LACTBL1A8MY62 500 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 CITO14578 2027 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 MEFVO15553 781 aaPredicted RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 PHACTR2O75167 634 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 ARHGAP25P42331 645 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 ETF1P62495 437 aaKnown RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 SLC18A3Q16572 532 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 SMYD5Q6GMV2 418 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 ZNF571Q7Z3V5 609 aaPredicted RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 GPIHBP1Q8IV16 184 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 KAT5Q92993 513 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 TATDN2Q93075 761 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 WNT8BQ93098 351 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 JAKMIP2Q96AA8 810 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 PI4K2AQ9BTU6 479 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 CCDC94Q9BW85 323 aaPredicted RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 MTMR12Q9C0I1 747 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 SENP6Q9GZR1 1112 aaPredicted RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.2■□□□□ 0.02
SS18-201ENST00000269137 PLEKHA5Q9HAU0 1116 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 FRMPD3Q5JV73 1810 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 NPTXRO95502 500 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 TNNC2P02585 160 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 PNMA6AP0CW24 399 aaPredicted RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 VAV2P52735 878 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 TFAMQ00059 246 aaKnown RBP15.2■□□□□ 0.02
SS18-201ENST00000269137 CYP27A1Q02318 531 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 MGAT3Q09327 533 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 PTK7Q13308 1070 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 ARHGAP29Q52LW3 1261 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 VPS36Q86VN1 386 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 NT5DC4Q86YG4 428 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 SLC43A3Q8NBI5 491 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 ANKRD36BP1Q96IX9 119 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 SYT11Q9BT88 431 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 PCDHA13Q9Y5I0 950 aa15.2■□□□□ 0.02
SS18-201ENST00000269137 DNAH12Q6ZR08 3092 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 A0A0U1RQJ8 604 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 ASS1P00966 412 aaKnown RBP15.19■□□□□ 0.02
SS18-201ENST00000269137 CHRNA1P02708 482 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 TMEM191BP0C7N4 346 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 TERF1P54274 439 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 GFPT1Q06210 699 aaPredicted RBP15.19■□□□□ 0.02
SS18-201ENST00000269137 KIAA1328Q86T90 577 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 FAM228AQ86W67 206 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 TXLNBQ8N3L3 684 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 SH3TC2Q8TF17 1288 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 ATRIPQ8WXE1 791 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 EIF2AQ9BY44 585 aaKnown RBP15.19■□□□□ 0.02
SS18-201ENST00000269137 IFIH1Q9BYX4 1025 aaKnown RBP15.19■□□□□ 0.02
SS18-201ENST00000269137 LZTFL1Q9NQ48 299 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 ADAMTS1Q9UHI8 967 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 PHF24Q9UPV7 400 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 PIN4Q9Y237 131 aaKnown RBP15.19■□□□□ 0.02
SS18-201ENST00000269137 NOC2LQ9Y3T9 749 aaKnown RBP15.19■□□□□ 0.02
SS18-201ENST00000269137 C2CD2Q9Y426 696 aa15.19■□□□□ 0.02
SS18-201ENST00000269137 A0A087X0T9 212 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 CST3P01034 146 aaPredicted RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 FAM228BP0C875 321 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 TBXAS1P24557 533 aaPredicted RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 MAGEA1P43355 309 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 NOP14P78316 857 aaKnown RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 BMS1Q14692 1282 aaKnown RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 SGSM1Q2NKQ1 1148 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 C10orf76Q5T2E6 689 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 SEZ6LQ9BYH1 1024 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 IMPG2Q9BZV3 1241 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 APOBEC3GQ9HC16 384 aaKnown RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 LUC7LQ9NQ29 371 aaKnown RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 PAK6Q9NQU5 681 aaPredicted RBP15.18■□□□□ 0.02
SS18-201ENST00000269137 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.18■□□□□ 0.022e-7■■■■■ 220.9
SS18-201ENST00000269137 DERAQ9Y315 318 aa15.18■□□□□ 0.02
SS18-201ENST00000269137 A0A1W2PQ45 241 aaPredicted RBP15.17■□□□□ 0.02
SS18-201ENST00000269137 A0A1W2PQY0 241 aa15.17■□□□□ 0.02
SS18-201ENST00000269137 CAND2O75155 1236 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms