RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ABCD1P33897 745 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 RTP1P59025 263 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 TRMT10CQ7L0Y3 403 aaKnown RBP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 ZNF677Q86XU0 584 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 CCDC13Q8IYE1 715 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 TRIM11Q96F44 468 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 BICD1Q96G01 975 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 ROPN1BQ9BZX4 212 aaPredicted RBP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 RPAP3Q9H6T3 665 aaPredicted RBP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 ROPN1Q9HAT0 212 aaPredicted RBP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 AVENQ9NQS1 362 aaPredicted RBP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 WHRNQ9P202 907 aa17.55■□□□□ 0.4
HOXD3-201ENST00000249440 SCAF8Q9UPN6 1271 aaKnown RBP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.55■□□□□ 0.4
HOXD3-201ENST00000249440 ARID2Q68CP9 1835 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 NR3C2P08235 984 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 MAN1A1P33908 653 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 SLC1A1P43005 524 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 SOX10P56693 466 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 IFI35P80217 286 aaPredicted RBP17.54■□□□□ 0.4
HOXD3-201ENST00000249440 MTMR2Q13614 643 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 TNFAIP1Q13829 316 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 BAATQ14032 418 aaPredicted RBP17.54■□□□□ 0.4
HOXD3-201ENST00000249440 TAOK1Q7L7X3 1001 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 P3H4Q92791 437 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 CEP89Q96ST8 783 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 FAM213AQ9BRX8 229 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 ADAM7Q9H2U9 754 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 PCDHB2Q9Y5E7 798 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 H0YCG3 227 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 VWA5AO00534 786 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 ZNF862O60290 1169 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 ITIH2P19823 946 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 KRT17Q04695 432 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 CXCL9Q07325 125 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 CCDC25Q86WR0 208 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 MCOLN2Q8IZK6 566 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 EPS8L3Q8TE67 593 aaKnown RBP17.54■□□□□ 0.4
HOXD3-201ENST00000249440 IFT74Q96LB3 600 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 TEPSINQ96N21 525 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 SYT17Q9BSW7 474 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 PI4K2AQ9BTU6 479 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 OSBPL7Q9BZF2 842 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 RNF146Q9NTX7 359 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 INTS9Q9NV88 658 aaKnown RBP17.54■□□□□ 0.4
HOXD3-201ENST00000249440 ADGRA3Q8IWK6 1321 aa17.54■□□□□ 0.4
HOXD3-201ENST00000249440 PSAPP07602 524 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 BPIFB4P59827 614 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 TNFAIP8L3Q5GJ75 292 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 SYDE1Q6ZW31 735 aaPredicted RBP17.53■□□□□ 0.4
HOXD3-201ENST00000249440 UHMK1Q8TAS1 419 aaKnown RBP17.53■□□□□ 0.4
HOXD3-201ENST00000249440 C1orf54Q8WWF1 131 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 ATXN2LQ8WWM7 1075 aaKnown RBP17.53■□□□□ 0.4
HOXD3-201ENST00000249440 ELMO3Q96BJ8 720 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 ZNF317Q96PQ6 595 aaPredicted RBP17.53■□□□□ 0.4
HOXD3-201ENST00000249440 KIAA1586Q9HCI6 787 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 AUHQ13825 339 aaKnown RBP17.53■□□□□ 0.4
HOXD3-201ENST00000249440 WDR44Q5JSH3 913 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 MFSD5Q6N075 450 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 SWSAP1Q6NVH7 229 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 KCNV1Q6PIU1 500 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 C15orf39Q6ZRI6 1047 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 GRK7Q8WTQ7 553 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 KCNG1Q9UIX4 513 aa17.53■□□□□ 0.4
HOXD3-201ENST00000249440 STBD1O95210 358 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 SLCO1A2P46721 670 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 LLGL1Q15334 1064 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 UBAP2Q5T6F2 1119 aaKnown RBP17.52■□□□□ 0.4
HOXD3-201ENST00000249440 ANKS4BQ8N8V4 417 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 ATP6V0A4Q9HBG4 840 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 PDLIM7Q9NR12 457 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 ASIC3Q9UHC3 531 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 RIPK3Q9Y572 518 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 MROH7Q68CQ1 1323 aa17.52■□□□□ 0.4
HOXD3-201ENST00000249440 MYH9P35579 1960 aaKnown RBP17.52■□□□□ 0.39
HOXD3-201ENST00000249440 ASAP2O43150 1006 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 EXTL3O43909 919 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 KCNA2P16389 499 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 RRM1P23921 792 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 NSFP46459 744 aaKnown RBP17.52■□□□□ 0.39
HOXD3-201ENST00000249440 CLDN10P78369 228 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 SNX1Q13596 522 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 ANKRD20A8PQ5CZ79 823 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 CPA5Q8WXQ8 436 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 ATG4CQ96DT6 458 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 SNF8Q96H20 258 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC114Q96M63 670 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 FNBP1Q96RU3 617 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 CDC42EP4Q9H3Q1 356 aaKnown RBP17.52■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC134Q9H6E4 229 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 CYP26B1Q9NR63 512 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 ARHGAP28Q9P2N2 729 aa17.52■□□□□ 0.39
HOXD3-201ENST00000249440 SEPT9Q9UHD8 586 aaPredicted RBP17.52■□□□□ 0.39
HOXD3-201ENST00000249440 MYPNQ86TC9 1320 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 PARP14Q460N5 1801 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 GAS8O95995 478 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 YBX3P16989 372 aaKnown RBP eCLIP17.51■□□□□ 0.39
HOXD3-201ENST00000249440 TNNI1P19237 187 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 LIG4P49917 911 aa17.51■□□□□ 0.39
HOXD3-201ENST00000249440 ZNF568Q3ZCX4 644 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms