RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W SIP3P38717 1229 aa4.42□□□□□ -1.7
PRP40YKL012W YGR018CP53211 109 aa4.42□□□□□ -1.7
PRP40YKL012W ACT1P60010 375 aaKnown RBP4.42□□□□□ -1.7
PRP40YKL012W MRS2Q01926 470 aa4.42□□□□□ -1.7
PRP40YKL012W ADH1P00330 348 aaKnown RBP4.41□□□□□ -1.7
PRP40YKL012W VPS21P36017 210 aaKnown RBP4.41□□□□□ -1.7
PRP40YKL012W HEK2P38199 381 aaKnown RBP RIP-Chip data4.41□□□□□ -1.7not detected
PRP40YKL012W POP8P38208 133 aa4.41□□□□□ -1.7
PRP40YKL012W YIL054WP40524 105 aa4.41□□□□□ -1.7
PRP40YKL012W YGL118CP53132 145 aa4.41□□□□□ -1.7
PRP40YKL012W FMP41P53889 259 aaKnown RBP4.41□□□□□ -1.7
PRP40YKL012W TLG1Q03322 224 aa4.41□□□□□ -1.7
PRP40YKL012W DCR2Q05924 578 aa4.41□□□□□ -1.7
PRP40YKL012W COQ1P18900 473 aa4.4□□□□□ -1.7
PRP40YKL012W CAT2P32796 670 aaKnown RBP4.4□□□□□ -1.7
PRP40YKL012W DBP7P36120 742 aaKnown RBP4.4□□□□□ -1.7
PRP40YKL012W YBR096WP38256 230 aa4.4□□□□□ -1.7
PRP40YKL012W EDC2P40023 145 aaPredicted RBP4.4□□□□□ -1.7
PRP40YKL012W CTF19Q02732 369 aa4.4□□□□□ -1.7
PRP40YKL012W YPR098CQ06089 161 aa4.4□□□□□ -1.7
PRP40YKL012W YDL144CQ07589 356 aa4.4□□□□□ -1.7
PRP40YKL012W PSK1P31374 1356 aa4.4□□□□□ -1.7
PRP40YKL012W BCK1Q01389 1478 aa4.4□□□□□ -1.7
PRP40YKL012W OPY1P38271 328 aa4.4□□□□□ -1.71
PRP40YKL012W YAP3P38749 330 aa4.4□□□□□ -1.71
PRP40YKL012W DIB1Q06819 143 aaPredicted RBP4.4□□□□□ -1.71
PRP40YKL012W MCH1Q07376 486 aa4.4□□□□□ -1.71
PRP40YKL012W SNU23Q12368 194 aaPredicted RBP4.4□□□□□ -1.71
PRP40YKL012W SNF2P22082 1703 aa4.39□□□□□ -1.71
PRP40YKL012W POX1P13711 748 aa4.39□□□□□ -1.71
PRP40YKL012W LDB16P25587 256 aa4.39□□□□□ -1.71
PRP40YKL012W YHL049CP38722 271 aa4.39□□□□□ -1.71
PRP40YKL012W RTC3P38804 111 aaPredicted RBP4.39□□□□□ -1.71
PRP40YKL012W ASP1P38986 381 aaPredicted RBP4.39□□□□□ -1.71
PRP40YKL012W UFE1P41834 346 aa4.39□□□□□ -1.71
PRP40YKL012W BNA7Q04066 261 aa4.39□□□□□ -1.71
PRP40YKL012W ATG17Q06410 417 aa4.39□□□□□ -1.71
PRP40YKL012W COQ10Q08058 207 aa4.39□□□□□ -1.71
PRP40YKL012W PLB3Q08108 686 aa4.39□□□□□ -1.71
PRP40YKL012W RFM1Q12192 310 aa4.39□□□□□ -1.71
PRP40YKL012W NCB2Q92317 146 aa4.39□□□□□ -1.71
PRP40YKL012W OSM1P21375 501 aaKnown RBP4.38□□□□□ -1.71
PRP40YKL012W YCR102CP25608 368 aa4.38□□□□□ -1.71
PRP40YKL012W RPB9P27999 122 aa4.38□□□□□ -1.71
PRP40YKL012W UTH1P36135 365 aa4.38□□□□□ -1.71
PRP40YKL012W RIB1P38066 345 aa4.38□□□□□ -1.71
PRP40YKL012W FZO1P38297 855 aa4.38□□□□□ -1.71
PRP40YKL012W MIC12P38341 106 aa4.38□□□□□ -1.71
PRP40YKL012W ZRG17P53735 605 aa4.38□□□□□ -1.71
PRP40YKL012W MRPS17Q03246 237 aaPredicted RBP4.38□□□□□ -1.71
PRP40YKL012W YMR166CQ03829 368 aa4.38□□□□□ -1.71
PRP40YKL012W RRS1Q08746 203 aaKnown RBP4.38□□□□□ -1.71
PRP40YKL012W RAD9P14737 1309 aa4.38□□□□□ -1.71
PRP40YKL012W PHO80P20052 293 aa4.37□□□□□ -1.71
PRP40YKL012W AVT6P40074 448 aa4.37□□□□□ -1.71
PRP40YKL012W YRB1P41920 201 aaKnown RBP4.37□□□□□ -1.71
PRP40YKL012W PEX10Q05568 337 aa4.37□□□□□ -1.71
PRP40YKL012W TIR4Q12218 487 aaPredicted RBP4.37□□□□□ -1.71
PRP40YKL012W SEY1Q99287 776 aa4.37□□□□□ -1.71
PRP40YKL012W TY1B-NL2Q99337 1749 aaKnown RBP4.37□□□□□ -1.71
PRP40YKL012W COX10P21592 462 aa4.37□□□□□ -1.71
PRP40YKL012W MAL32P38158 584 aa4.37□□□□□ -1.71
PRP40YKL012W MAL12P53341 584 aa4.37□□□□□ -1.71
PRP40YKL012W FLO11P08640 1367 aa4.36□□□□□ -1.71
PRP40YKL012W YMR31P19955 123 aa4.36□□□□□ -1.71
PRP40YKL012W URA8P38627 578 aaPredicted RBP4.36□□□□□ -1.71
PRP40YKL012W GOS1P38736 223 aa4.36□□□□□ -1.71
PRP40YKL012W DXO1Q06349 442 aa4.36□□□□□ -1.71
PRP40YKL012W DNF3Q12674 1656 aa4.36□□□□□ -1.71
PRP40YKL012W CDC33P07260 213 aaKnown RBP4.35□□□□□ -1.71
PRP40YKL012W PRP18P33411 251 aaPredicted RBP4.35□□□□□ -1.71
PRP40YKL012W YKL075CP36083 450 aa4.35□□□□□ -1.71
PRP40YKL012W HMT1P38074 348 aa4.35□□□□□ -1.71
PRP40YKL012W PHO89P38361 574 aa4.35□□□□□ -1.71
PRP40YKL012W CUE1P38428 203 aa4.35□□□□□ -1.71
PRP40YKL012W COX15P40086 486 aa4.35□□□□□ -1.71
PRP40YKL012W SLX9P53251 210 aaPredicted RBP4.35□□□□□ -1.71
PRP40YKL012W SSQ1Q05931 657 aaPredicted RBP4.35□□□□□ -1.71
PRP40YKL012W STE18P18852 110 aa4.35□□□□□ -1.71
PRP40YKL012W ATG38Q05789 226 aaKnown RBP4.35□□□□□ -1.71
PRP40YKL012W HAP1P0CE41 1502 aa4.34□□□□□ -1.71
PRP40YKL012W SAC3P46674 1301 aa4.34□□□□□ -1.71
PRP40YKL012W YBR121C-AP0C5L4 52 aa4.34□□□□□ -1.71
PRP40YKL012W YKR104WP0CE69 306 aa4.34□□□□□ -1.71
PRP40YKL012W ERG2P32352 222 aa4.34□□□□□ -1.71
PRP40YKL012W YHI9P38765 294 aa4.34□□□□□ -1.71
PRP40YKL012W ERG28P40030 148 aa4.34□□□□□ -1.71
PRP40YKL012W SYS1P41544 203 aa4.34□□□□□ -1.71
PRP40YKL012W SNZ3P43545 298 aa4.34□□□□□ -1.71
PRP40YKL012W UFD1P53044 361 aa4.34□□□□□ -1.71
PRP40YKL012W CAX4P53223 239 aa4.34□□□□□ -1.71
PRP40YKL012W AAH1P53909 347 aa4.34□□□□□ -1.71
PRP40YKL012W PIN3Q06449 215 aa4.34□□□□□ -1.71
PRP40YKL012W YKL183C-AQ3E765 70 aa4.34□□□□□ -1.71
PRP40YKL012W SGE1P33335 543 aa4.33□□□□□ -1.72
PRP40YKL012W CBT1P36038 271 aaPredicted RBP4.33□□□□□ -1.72
PRP40YKL012W YHL044WP38727 235 aa4.33□□□□□ -1.72
PRP40YKL012W SEO1P39709 593 aa4.33□□□□□ -1.72
PRP40YKL012W FRT2P39734 528 aa4.33□□□□□ -1.72
PRP40YKL012W RAD17P48581 401 aa4.33□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 17.6 ms