RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W PST1Q12355 444 aa2.4□□□□□ -2.03
UPF3YGR072W RHO1P06780 209 aaKnown RBP2.39□□□□□ -2.03
UPF3YGR072W STE18P18852 110 aa2.39□□□□□ -2.03
UPF3YGR072W FMT1P32785 401 aa2.39□□□□□ -2.03
UPF3YGR072W SFC1P33303 322 aa2.39□□□□□ -2.03
UPF3YGR072W TKL2P33315 681 aa2.39□□□□□ -2.03
UPF3YGR072W YBR096WP38256 230 aa2.39□□□□□ -2.03
UPF3YGR072W COS4P43542 379 aa2.39□□□□□ -2.03
UPF3YGR072W MIG2P53035 382 aa2.39□□□□□ -2.03
UPF3YGR072W CTF19Q02732 369 aa2.39□□□□□ -2.03
UPF3YGR072W YPL039WQ03080 316 aa2.39□□□□□ -2.03
UPF3YGR072W DCR2Q05924 578 aa2.39□□□□□ -2.03
UPF3YGR072W FAB1P34756 2278 aa2.39□□□□□ -2.03
UPF3YGR072W YBR121C-AP0C5L4 52 aa2.38□□□□□ -2.03
UPF3YGR072W COS2P0CX12 379 aa2.38□□□□□ -2.03
UPF3YGR072W COS3P0CX13 379 aa2.38□□□□□ -2.03
UPF3YGR072W CDC10P25342 322 aaKnown RBP2.38□□□□□ -2.03
UPF3YGR072W YCR102CP25608 368 aa2.38□□□□□ -2.03
UPF3YGR072W GDH2P33327 1092 aaKnown RBP2.38□□□□□ -2.03
UPF3YGR072W YKL075CP36083 450 aa2.38□□□□□ -2.03
UPF3YGR072W MAL32P38158 584 aa2.38□□□□□ -2.03
UPF3YGR072W MIC12P38341 106 aa2.38□□□□□ -2.03
UPF3YGR072W ECM14P38836 430 aa2.38□□□□□ -2.03
UPF3YGR072W YJL028WP47062 111 aa2.38□□□□□ -2.03
UPF3YGR072W MAL12P53341 584 aa2.38□□□□□ -2.03
UPF3YGR072W YDR114CQ04597 100 aa2.38□□□□□ -2.03
UPF3YGR072W RLP24Q07915 199 aaKnown RBP2.38□□□□□ -2.03
UPF3YGR072W YLR126CQ12288 251 aa2.38□□□□□ -2.03
UPF3YGR072W GIS3Q12418 502 aa2.38□□□□□ -2.03
UPF3YGR072W MRX4Q12467 430 aa2.38□□□□□ -2.03
UPF3YGR072W ADF1Q2V2Q1 113 aa2.38□□□□□ -2.03
UPF3YGR072W SEY1Q99287 776 aa2.38□□□□□ -2.03
UPF3YGR072W ZWF1P11412 505 aaKnown RBP2.37□□□□□ -2.03
UPF3YGR072W YMR31P19955 123 aa2.37□□□□□ -2.03
UPF3YGR072W RNP1P32385 249 aa2.37□□□□□ -2.03
UPF3YGR072W SIP3P38717 1229 aa2.37□□□□□ -2.03
UPF3YGR072W OST3P48439 350 aa2.37□□□□□ -2.03
UPF3YGR072W MIC26P50087 233 aa2.37□□□□□ -2.03
UPF3YGR072W YMR166CQ03829 368 aa2.37□□□□□ -2.03
UPF3YGR072W YMR226CQ05016 267 aaKnown RBP2.37□□□□□ -2.03
UPF3YGR072W SEI1Q06058 285 aa2.37□□□□□ -2.03
UPF3YGR072W YOL019WQ08157 551 aa2.37□□□□□ -2.03
UPF3YGR072W TIM22Q12328 207 aa2.37□□□□□ -2.03
UPF3YGR072W PAN1P32521 1480 aa2.37□□□□□ -2.03
UPF3YGR072W CDC36P06100 191 aaPredicted RBP2.36□□□□□ -2.03
UPF3YGR072W ARG80P07249 177 aa2.36□□□□□ -2.03
UPF3YGR072W BCY1P07278 416 aaKnown RBP2.36□□□□□ -2.03
UPF3YGR072W EHD3P28817 500 aa2.36□□□□□ -2.03
UPF3YGR072W PRP18P33411 251 aaPredicted RBP2.36□□□□□ -2.03
UPF3YGR072W RIB1P38066 345 aa2.36□□□□□ -2.03
UPF3YGR072W YER189WP40104 122 aa2.36□□□□□ -2.03
UPF3YGR072W CPR7P47103 393 aa2.36□□□□□ -2.03
UPF3YGR072W ILM1P47155 203 aa2.36□□□□□ -2.03
UPF3YGR072W MCM22P47167 239 aa2.36□□□□□ -2.03
UPF3YGR072W NSA1P53136 463 aaPredicted RBP2.36□□□□□ -2.03
UPF3YGR072W FYV6P53913 173 aa2.36□□□□□ -2.03
UPF3YGR072W YML108WQ03759 105 aa2.36□□□□□ -2.03
UPF3YGR072W YDR222WQ04925 415 aa2.36□□□□□ -2.03
UPF3YGR072W CDC123Q05791 360 aa2.36□□□□□ -2.03
UPF3YGR072W HEM25Q07534 307 aa2.36□□□□□ -2.03
UPF3YGR072W YOR186WQ08560 144 aa2.36□□□□□ -2.03
UPF3YGR072W YBL112CQ3E7Y4 105 aa2.36□□□□□ -2.03
UPF3YGR072W RPL28P02406 149 aaKnown RBP2.35□□□□□ -2.03
UPF3YGR072W SPT3P06844 337 aa2.35□□□□□ -2.03
UPF3YGR072W CBT1P36038 271 aaPredicted RBP2.35□□□□□ -2.03
UPF3YGR072W CAB3P36076 571 aa2.35□□□□□ -2.03
UPF3YGR072W RAD17P48581 401 aa2.35□□□□□ -2.03
UPF3YGR072W YPR195CQ06594 109 aa2.35□□□□□ -2.03
UPF3YGR072W YPR011CQ12251 326 aa2.35□□□□□ -2.03
UPF3YGR072W IPP1P00817 287 aaKnown RBP2.34□□□□□ -2.03
UPF3YGR072W SNA3P14359 133 aa2.34□□□□□ -2.03
UPF3YGR072W NTF2P33331 125 aaKnown RBP2.34□□□□□ -2.03
UPF3YGR072W ECM13P38195 257 aa2.34□□□□□ -2.03
UPF3YGR072W ERG28P40030 148 aa2.34□□□□□ -2.03
UPF3YGR072W TRM9P49957 279 aa2.34□□□□□ -2.03
UPF3YGR072W EMI1Q04406 187 aa2.34□□□□□ -2.03
UPF3YGR072W YPL247CQ12523 523 aa2.34□□□□□ -2.03
UPF3YGR072W YLR462WO13556 202 aa2.33□□□□□ -2.04
UPF3YGR072W HIS3P06633 220 aa2.33□□□□□ -2.04
UPF3YGR072W IDH1P28834 360 aaKnown RBP RIP-Chip data2.33□□□□□ -2.04not detected
UPF3YGR072W PRY2P36110 329 aa2.33□□□□□ -2.04
UPF3YGR072W URA8P38627 578 aaPredicted RBP2.33□□□□□ -2.04
UPF3YGR072W RTC3P38804 111 aaPredicted RBP2.33□□□□□ -2.04
UPF3YGR072W YEL075CP39972 122 aa2.33□□□□□ -2.04
UPF3YGR072W RFC4P40339 323 aaKnown RBP2.33□□□□□ -2.04
UPF3YGR072W PFS2P42841 465 aaKnown RBP2.33□□□□□ -2.04
UPF3YGR072W RMR1P53060 241 aa2.33□□□□□ -2.04
UPF3YGR072W GIM3P53900 129 aa2.33□□□□□ -2.04
UPF3YGR072W YNL046WP53956 172 aa2.33□□□□□ -2.04
UPF3YGR072W MRPS17Q03246 237 aaPredicted RBP2.33□□□□□ -2.04
UPF3YGR072W JLP1Q12358 412 aa2.33□□□□□ -2.04
UPF3YGR072W DCN1Q12395 269 aa2.33□□□□□ -2.04
UPF3YGR072W EMP46Q12396 444 aa2.33□□□□□ -2.04
UPF3YGR072W YKL183C-AQ3E765 70 aa2.33□□□□□ -2.04
UPF3YGR072W CDC33P07260 213 aaKnown RBP2.32□□□□□ -2.04
UPF3YGR072W RPS23AP0CX29 145 aaKnown RBP2.32□□□□□ -2.04
UPF3YGR072W RPS23BP0CX30 145 aa2.32□□□□□ -2.04
UPF3YGR072W URA6P15700 204 aa2.32□□□□□ -2.04
UPF3YGR072W PPH21P23594 369 aa2.32□□□□□ -2.04
UPF3YGR072W TOM40P23644 387 aaKnown RBP2.32□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms