RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CDC42EP1Q00587 391 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 PTK2Q05397 1052 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 ZNF571Q7Z3V5 609 aaPredicted RBP18.23■□□□□ 0.51
CLN3-252ENST00000636907 KIAA1328Q86T90 577 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 CEP120Q8N960 986 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 KAT5Q92993 513 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 IRX2Q9BZI1 471 aaPredicted RBP18.23■□□□□ 0.51
CLN3-252ENST00000636907 CDHR5Q9HBB8 845 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 GINS2Q9Y248 185 aa18.23■□□□□ 0.51
CLN3-252ENST00000636907 BZW2Q9Y6E2 419 aaKnown RBP18.23■□□□□ 0.51
CLN3-252ENST00000636907 RCCD1A6NED2 376 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 EVI5O60447 810 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 ERLIN2O94905 339 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 GNAT1P11488 350 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 FGFR4P22455 802 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 VAV2P52735 878 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 GNG11P61952 73 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 BIRC3Q13489 604 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 MAP3K21Q5TCX8 1036 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 OR5B17Q8NGF7 314 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 RAET1EQ8TD07 263 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 ELMO3Q96BJ8 720 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 NT5C1BQ96P26 610 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 GCOM2Q9BZD3 368 aaPredicted RBP18.22■□□□□ 0.51
CLN3-252ENST00000636907 TRIM10Q9UDY6 481 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 PCDHA13Q9Y5I0 950 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 TRIP12Q14669 1992 aaPredicted RBP18.22■□□□□ 0.51
CLN3-252ENST00000636907 RBAK-RBAKDNI3L0D1 243 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 FOXN3O00409 490 aaPredicted RBP18.22■□□□□ 0.51
CLN3-252ENST00000636907 FANCGO15287 622 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 VNN1O95497 513 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 HLA-DRAP01903 254 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 MCF2P10911 925 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 NBPF20Q3BBV1 942 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 ZNF662Q6ZS27 426 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 WDR49Q8IV35 697 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 TMEM192Q8IY95 271 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 PPM1KQ8N3J5 372 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 KLHDC9Q8NEP7 349 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 KIF18AQ8NI77 898 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 HELQQ8TDG4 1101 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 JAKMIP2Q96AA8 810 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 VTI1AQ96AJ9 217 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 FAM212AQ96EL1 285 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 KREMEN1Q96MU8 473 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 OSMRQ99650 979 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 PI4K2AQ9BTU6 479 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 DNAI1Q9UI46 699 aa18.22■□□□□ 0.51
CLN3-252ENST00000636907 SCN10AQ9Y5Y9 1956 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 A0A087X0T9 212 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 GNRH1P01148 92 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 FAM228BP0C875 321 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 PIK3CAP42336 1068 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 SURF1Q15526 300 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 SLC18A3Q16572 532 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 TATDN2Q93075 761 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 ERO1AQ96HE7 468 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 WDR24Q96S15 920 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLN3-252ENST00000636907 IFIH1Q9BYX4 1025 aaKnown RBP18.21■□□□□ 0.51
CLN3-252ENST00000636907 LACRTQ9GZZ8 138 aa18.21■□□□□ 0.51
CLN3-252ENST00000636907 A0A1B0GUA9 196 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 KIF5CO60282 957 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 FKTNO75072 461 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 ZC3H11AO75152 810 aaKnown RBP eCLIP18.2■□□□□ 0.5
CLN3-252ENST00000636907 DARSP14868 501 aaKnown RBP18.2■□□□□ 0.5
CLN3-252ENST00000636907 CCDC122Q5T0U0 273 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 FMNL3Q8IVF7 1028 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 PXYLP1Q8TE99 480 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 ZNF296Q8WUU4 475 aaPredicted RBP18.2■□□□□ 0.5
CLN3-252ENST00000636907 ADAMTS1Q9UHI8 967 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 GTF2IRD1Q9UHL9 959 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 PAXBP1Q9Y5B6 917 aa18.2■□□□□ 0.5
CLN3-252ENST00000636907 MYCNP04198 464 aaPredicted RBP18.19■□□□□ 0.5
CLN3-252ENST00000636907 ASGR1P07306 291 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 STAG3L1P0CL83 205 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 CXCL8P10145 99 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 MAGEA1P43355 309 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 AP3M2P53677 418 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 MFAP3P55082 362 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 KCNA10Q16322 511 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 CCSAPQ6IQ19 270 aaPredicted RBP18.19■□□□□ 0.5
CLN3-252ENST00000636907 CATSPER4Q7RTX7 472 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 RPF1Q9H9Y2 349 aaKnown RBP18.19■□□□□ 0.5
CLN3-252ENST00000636907 DDX20Q9UHI6 824 aaKnown RBP18.19■□□□□ 0.5
CLN3-252ENST00000636907 GUCA1BQ9UMX6 200 aa18.19■□□□□ 0.5
CLN3-252ENST00000636907 CLTAP09496 248 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 CCDC172P0C7W6 258 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 EIF4BP23588 611 aaKnown RBP18.18■□□□□ 0.5
CLN3-252ENST00000636907 CST5P28325 142 aaPredicted RBP18.18■□□□□ 0.5
CLN3-252ENST00000636907 HOXA11P31270 313 aaPredicted RBP18.18■□□□□ 0.5
CLN3-252ENST00000636907 ZNF569Q5MCW4 686 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 GDF6Q6KF10 455 aaPredicted RBP18.18■□□□□ 0.5
CLN3-252ENST00000636907 EFCAB13Q8IY85 973 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 NME8Q8N427 588 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 TMEM40Q8WWA1 233 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 SHC3Q92529 594 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 MTMR12Q9C0I1 747 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 ANK1P16157 1881 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 PCNTO95613 3336 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms