RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 DLATP10515 647 aaKnown RBP22.33■■□□□ 1.17
CLN3-245ENST00000636172 CSF2RAP15509 400 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 AKAP5P24588 427 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 CLDN10P78369 228 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 KCNH2Q12809 1159 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 FAM43BQ6ZT52 329 aaPredicted RBP22.33■■□□□ 1.17
CLN3-245ENST00000636172 MRPL10Q7Z7H8 261 aaKnown RBP22.33■■□□□ 1.17
CLN3-245ENST00000636172 FAM212AQ96EL1 285 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 TOPORSQ9NS56 1045 aaPredicted RBP22.33■■□□□ 1.17
CLN3-245ENST00000636172 PRKAG2Q9UGJ0 569 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 LTBP2Q14767 1821 aa22.33■■□□□ 1.17
CLN3-245ENST00000636172 PTPRJQ12913 1337 aa22.33■■□□□ 1.16
CLN3-245ENST00000636172 TRIP11Q15643 1979 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 TTC26A0AVF1 554 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 C9IYK1 514 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 TULP1O00294 542 aaPredicted RBP22.32■■□□□ 1.16
CLN3-245ENST00000636172 IL18RAPO95256 599 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 ATF7P17544 494 aaPredicted RBP22.32■■□□□ 1.16
CLN3-245ENST00000636172 NR1I3Q14994 352 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 FILIP1LQ4L180 1135 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 USP37Q86T82 979 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 TMEM199Q8N511 208 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 FNBP1Q96RU3 617 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 MICAL3Q7RTP6 2002 aa22.32■■□□□ 1.16
CLN3-245ENST00000636172 MEIS3P2A8K0S8 358 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 LACTBL1A8MY62 500 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 PES1O00541 588 aaKnown RBP22.31■■□□□ 1.16
CLN3-245ENST00000636172 TEX33O43247 280 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 AFPP02771 609 aaKnown RBP22.31■■□□□ 1.16
CLN3-245ENST00000636172 ZNF75DP51815 510 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 YARSP54577 528 aaKnown RBP22.31■■□□□ 1.16
CLN3-245ENST00000636172 PPP3CAQ08209 521 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 CNKSR3Q6P9H4 555 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 SLC24A5Q71RS6 500 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 ECHDC2Q86YB7 292 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 FAM84AQ96KN4 292 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 SNX27Q96L92 541 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 CGRRF1Q99675 332 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 CXCL16Q9H2A7 254 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 PLEKHA5Q9HAU0 1116 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 C1orf112Q9NSG2 853 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 ENPP3O14638 875 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 CBFA2T2O43439 604 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 EVI5O60447 810 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 SKIP12755 728 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 ITGA4P13612 1032 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 FAM189BP81408 668 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 SURF1Q15526 300 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 LMBRD2Q68DH5 695 aaPredicted RBP22.31■■□□□ 1.16
CLN3-245ENST00000636172 ALKAL1Q6UXT8 129 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 ZNF598Q86UK7 904 aaKnown RBP22.31■■□□□ 1.16
CLN3-245ENST00000636172 HACE1Q8IYU2 909 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 LPPQ93052 612 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 MMRN2Q9H8L6 949 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 PARP2Q9UGN5 583 aa22.31■■□□□ 1.16
CLN3-245ENST00000636172 PDCD11Q14690 1871 aaKnown RBP22.3■■□□□ 1.16
CLN3-245ENST00000636172 ADCY5O95622 1261 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 GCLMP48507 274 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 FMO5P49326 533 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 UBXN1Q04323 297 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 CBWD6Q4V339 395 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 CBWD3Q5JTY5 395 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 CBWD5Q5RIA9 395 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 AGMOQ6ZNB7 445 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 WDR49Q8IV35 697 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 EFCAB13Q8IY85 973 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 ZNF516Q92618 1163 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 ASB7Q9H672 318 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 KLK14Q9P0G3 267 aa22.3■■□□□ 1.16
CLN3-245ENST00000636172 STX10O60499 249 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 NFICP08651 508 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 TNNI1P19237 187 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 IBSPP21815 317 aaPredicted RBP22.29■■□□□ 1.16
CLN3-245ENST00000636172 GTF2H1P32780 548 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 PTPN21Q16825 1174 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 JADE1Q6IE81 842 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 CD302Q8IX05 232 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 RNF169Q8NCN4 708 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 OR5B17Q8NGF7 314 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 BADQ92934 168 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 CNTN3Q9P232 1028 aa22.29■■□□□ 1.16
CLN3-245ENST00000636172 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.28■■□□□ 1.16
CLN3-245ENST00000636172 TPM3P06753 285 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 PFKMP08237 780 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 XKR4Q5GH76 650 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 RPUSD2Q8IZ73 545 aaKnown RBP22.28■■□□□ 1.16
CLN3-245ENST00000636172 PGBD4Q96DM1 585 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 MRFAP1L1Q96HT8 127 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 ZMAT2Q96NC0 199 aaKnown RBP22.28■■□□□ 1.16
CLN3-245ENST00000636172 TMEM117Q9H0C3 514 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 GIT1Q9Y2X7 761 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 TTC3P53804 2025 aa22.28■■□□□ 1.16
CLN3-245ENST00000636172 SYN1P17600 705 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 MXI1P50539 228 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 MYL7Q01449 175 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 IKBKEQ14164 716 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 FKBP15Q5T1M5 1219 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 C15orf39Q6ZRI6 1047 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 ZFP42Q96MM3 310 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 TMEM8AQ9HCN3 771 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms