RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 VPS52Q8N1B4 723 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 GBP4Q96PP9 640 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 TARS2Q9BW92 718 aaKnown RBP19.84■□□□□ 0.77
CLN3-243ENST00000635973 APOL6Q9BWW8 343 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 APOL5Q9BWW9 433 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 RSAD1Q9HA92 442 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 KANSL3Q9P2N6 904 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 ANKFY1Q9P2R3 1169 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 IPPQ9Y573 584 aa19.84■□□□□ 0.77
CLN3-243ENST00000635973 C2orf71A6NGG8 1288 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 ITGA4P13612 1032 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 MATR3P43243 847 aaKnown RBP eCLIP19.83■□□□□ 0.77
CLN3-243ENST00000635973 CBX2Q14781 532 aaPredicted RBP19.83■□□□□ 0.77
CLN3-243ENST00000635973 DCAF4L1Q3SXM0 396 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 ZNF568Q3ZCX4 644 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 CES5AQ6NT32 575 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 CNNM4Q6P4Q7 775 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 UNC13DQ70J99 1090 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 TCHPQ9BT92 498 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 NRDE2Q9H7Z3 1164 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 UBN1Q9NPG3 1134 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 OLFML3Q9NRN5 406 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 TBX20Q9UMR3 447 aa19.83■□□□□ 0.77
CLN3-243ENST00000635973 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 MEIS3P2A8K0S8 358 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 HNRNPDLO14979 420 aaKnown RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 GADD45BO75293 160 aaPredicted RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 MYL1P05976 194 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 GALTP07902 379 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 LIG4P49917 911 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 ZC2HC1CQ53FD0 456 aaPredicted RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 EEF1DP3Q658K8 133 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 KANK3Q6NY19 840 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 STXBP4Q6ZWJ1 553 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 DDX53Q86TM3 631 aaKnown RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 FMR1NBQ8N0W7 255 aaPredicted RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 HVCN1Q96D96 273 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 IGSF21Q96ID5 467 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 FIZ1Q96SL8 496 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 ACO2Q99798 780 aaKnown RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 NXF3Q9H4D5 531 aaKnown RBP19.82■□□□□ 0.76
CLN3-243ENST00000635973 EXOC1Q9NV70 894 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 STK39Q9UEW8 545 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 TNFSF13BQ9Y275 285 aa19.82■□□□□ 0.76
CLN3-243ENST00000635973 LOC730098B7Z3J9 87 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 PRPF40AO75400 957 aaKnown RBP19.81■□□□□ 0.76
CLN3-243ENST00000635973 ALDH2P05091 517 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 HARSP12081 509 aaKnown RBP19.81■□□□□ 0.76
CLN3-243ENST00000635973 UBE2HP62256 183 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 GTF2BQ00403 316 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 ALCAMQ13740 583 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 KCNC3Q14003 757 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 FAM26FQ5R3K3 315 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 AGMOQ6ZNB7 445 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 ZNF720Q7Z2F6 126 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 MRPL10Q7Z7H8 261 aaKnown RBP19.81■□□□□ 0.76
CLN3-243ENST00000635973 ZBTB33Q86T24 672 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 SMG8Q8ND04 991 aaKnown RBP19.81■□□□□ 0.76
CLN3-243ENST00000635973 CCDC47Q96A33 483 aaKnown RBP19.81■□□□□ 0.76
CLN3-243ENST00000635973 ST6GALNAC4Q9H4F1 302 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 DNAJB4Q9UDY4 337 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 PARP2Q9UGN5 583 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 HES2Q9Y543 173 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 PCDHB13Q9Y5F0 798 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 HCFC2Q9Y5Z7 792 aa19.81■□□□□ 0.76
CLN3-243ENST00000635973 TDRD15B5MCY1 1934 aaKnown RBP19.8■□□□□ 0.76
CLN3-243ENST00000635973 PVALEFA0A1B0GWK0 134 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 SPDYE4A6NLX3 237 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 KINO60870 393 aaKnown RBP19.8■□□□□ 0.76
CLN3-243ENST00000635973 CLASP2O75122 1294 aaKnown RBP19.8■□□□□ 0.76
CLN3-243ENST00000635973 TOM1L1O75674 476 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 POMCP01189 267 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 PRR29P0C7W0 189 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 MYBP10242 640 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 SYCE2Q6PIF2 218 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 MPZL3Q6UWV2 235 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 ZPBP2Q6X784 338 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 MAP4K3Q8IVH8 894 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 SUSD6Q92537 303 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 KCNN1Q92952 543 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 HPS3Q969F9 1004 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 ZBP1Q9H171 429 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 HOOK1Q9UJC3 728 aaKnown RBP19.8■□□□□ 0.76
CLN3-243ENST00000635973 EXOC7Q9UPT5 735 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 FAN1Q9Y2M0 1017 aa19.8■□□□□ 0.76
CLN3-243ENST00000635973 GOLGA6L22H0YM25 854 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 NR1I2O75469 434 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 CTSAP10619 480 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 SLC11A1P49279 550 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 ITIH3Q06033 890 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 SNW1Q13573 536 aaKnown RBP19.79■□□□□ 0.76
CLN3-243ENST00000635973 POSTNQ15063 836 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 L1TD1Q5T7N2 865 aaKnown RBP19.79■□□□□ 0.76
CLN3-243ENST00000635973 TMEM173Q86WV6 379 aaPredicted RBP19.79■□□□□ 0.76
CLN3-243ENST00000635973 ZNF280BQ86YH2 543 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 SYCP3Q8IZU3 236 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 ENGASEQ8NFI3 743 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 AUTS2Q8WXX7 1259 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 EDAQ92838 391 aa19.79■□□□□ 0.76
CLN3-243ENST00000635973 MFSD14AQ96MC6 490 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms