RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ATP6V1B1P15313 513 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 TYK2P29597 1187 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 BARHL2Q9NY43 387 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 WHRNQ9P202 907 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 KIF17Q9P2E2 1029 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 HERC5Q9UII4 1024 aaKnown RBP9.4□□□□□ -0.91
VCL-206ENST00000623461 MAP3K4Q9Y6R4 1608 aa9.4□□□□□ -0.91
VCL-206ENST00000623461 PPIP5K2O43314 1243 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 CEBPAP49715 358 aaPredicted RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 ADARP55265 1226 aaKnown RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 MAPK7Q13164 816 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 GALNT4Q8N4A0 578 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 CDH2P19022 906 aaPredicted RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 PRAMEP78395 509 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 DNAJC3Q13217 504 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 SLC12A1Q13621 1099 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 TTC33Q6PID6 262 aaPredicted RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 TRAF7Q6Q0C0 670 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 SUPT20HQ8NEM7 779 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 NMD3Q96D46 503 aaKnown RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 MMADHCQ9H3L0 296 aaPredicted RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 PICK1Q9NRD5 415 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 HEY2Q9UBP5 337 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 FAM153AQ9UHL3 310 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 UCHL3P15374 230 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 HERVK_113P62684 666 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 IZUMO2Q6UXV1 221 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 LRRN4CLQ8ND94 238 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 ASPSCR1Q9BZE9 553 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 ALG13Q9NP73 1137 aaKnown RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 AURKCQ9UQB9 309 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 GEMIN4P57678 1058 aaKnown RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 KCNMA1Q12791 1236 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 GRM4Q14833 912 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 MFSD14BQ5SR56 506 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 METTL13Q8N6R0 699 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 E2F7Q96AV8 911 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 APOL6Q9BWW8 343 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 ANO3Q9BYT9 981 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 CELF4Q9BZC1 486 aaKnown RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 POTEB3A0JP26 581 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 KPNA4O00629 521 aaPredicted RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 OATP04181 439 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 KLRC1P26715 233 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 TBX2Q13207 712 aaPredicted RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 POTEBQ6S5H4 581 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 TPCN2Q8NHX9 752 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 TTC8Q8TAM2 541 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 INPP5DQ92835 1189 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 CAAP1Q9H8G2 361 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 HPSEQ9Y251 543 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 CDY2AQ9Y6F7 541 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 CDY1Q9Y6F8 540 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 XPOTO43592 962 aaKnown RBP9.39□□□□□ -0.91
VCL-206ENST00000623461 MCAMP43121 646 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 BTKQ06187 659 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 SEPT8Q92599 483 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 KLHL25Q9H0H3 589 aa9.39□□□□□ -0.91
VCL-206ENST00000623461 SNRPAP09012 282 aaKnown RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 ITGA8P53708 1063 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 ELMSAN1Q6PJG2 1045 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 PCYOX1LQ8NBM8 494 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 CYGBQ8WWM9 190 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 TRIM63Q969Q1 353 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 RPS6KC1Q96S38 1066 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 PI4K2BG5E9Z4 385 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 RGS2P41220 211 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 ZYXQ15942 572 aaKnown RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 EDRF1Q3B7T1 1238 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 ANKMY2Q8IV38 441 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 ZNF513Q8N8E2 541 aaPredicted RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 GDF3Q9NR23 364 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 ATP5BP06576 529 aaKnown RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 USP17L2Q6R6M4 530 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 CATSPER3Q86XQ3 398 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 C2CD2Q9Y426 696 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 LRRC7Q96NW7 1537 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 FRMPD1Q5SYB0 1578 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 POTEMA6NI47 508 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 SRP72O76094 671 aaKnown RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 PTK7Q13308 1070 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 UBE2SQ16763 222 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 GJC2Q5T442 439 aaPredicted RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 SNX30Q5VWJ9 437 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 PCNX4Q63HM2 1172 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 SAR1AQ9NR31 198 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 SEPT9Q9UHD8 586 aaPredicted RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 TAGLN3Q9UI15 199 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 PNPLA6Q8IY17 1366 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 ENO3P13929 434 aaPredicted RBP9.38□□□□□ -0.91
VCL-206ENST00000623461 GCLMP48507 274 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 LRRC74BQ6ZQY2 392 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 WDR60Q8WVS4 1066 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 HPS3Q969F9 1004 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 C9orf72Q96LT7 481 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 APEX2Q9UBZ4 518 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 GRID1Q9ULK0 1009 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 GOLGA8RI6L899 631 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 CTDNEP1O95476 244 aa9.38□□□□□ -0.91
VCL-206ENST00000623461 AASDHQ4L235 1098 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms