RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 CNMDO75829 334 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 GPC3P51654 580 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 ERVK-9P63128 1117 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 KCTD2Q14681 263 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 TMEM132AQ24JP5 1023 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 PRRT2Q7Z6L0 340 aaPredicted RBP13.33□□□□□ -0.28
CIITA-212ENST00000618207 USP37Q86T82 979 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 RNF149Q8NC42 400 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 OR5B17Q8NGF7 314 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 FAM71BQ8TC56 605 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 NLRP4Q96MN2 994 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 TRIM51Q9BSJ1 452 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 TRIM7Q9C029 511 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 NRBP2Q9NSY0 501 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 PAPPA2Q9BXP8 1791 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 NCANO14594 1321 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 UMODL1Q5DID0 1318 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 MAPK13O15264 365 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 ATG7O95352 703 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 KRT14P02533 472 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 COMTP21964 271 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 GARTP22102 1010 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 ICAM3P32942 547 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 SNRPFP62306 86 aaKnown RBP13.33□□□□□ -0.28
CIITA-212ENST00000618207 NEDD9Q14511 834 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 ZNF394Q53GI3 561 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 WDR44Q5JSH3 913 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 KCTD16Q68DU8 428 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 CRELD2Q6UXH1 353 aaPredicted RBP13.33□□□□□ -0.28
CIITA-212ENST00000618207 RHPN2Q8IUC4 686 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 TMEM130Q8N3G9 435 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 ACTRT1Q8TDG2 376 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 TMC2Q8TDI7 906 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 RUFY1Q96T51 708 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 SYT17Q9BSW7 474 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 ERVK-5Q9HDB9 667 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 TRPC6Q9Y210 931 aa13.33□□□□□ -0.28
CIITA-212ENST00000618207 OTOFQ9HC10 1997 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 ZNFX1Q9P2E3 1918 aaKnown RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 DDX3YO15523 660 aaKnown RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 SPOPO43791 374 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 CFHP08603 1231 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 CYP2C19P33261 490 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 NAMPTP43490 491 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 GOLGA6L1Q8N7Z2 621 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 SCFD2Q8WU76 684 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 PSPC1Q8WXF1 523 aaKnown RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 SPATA33Q96N06 139 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 MMP19Q99542 508 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 ISCUQ9H1K1 167 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 RABEP2Q9H5N1 569 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 CLEC11AQ9Y240 323 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 DAPK3O43293 454 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 ZBTB48P10074 688 aaPredicted RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 GLE1Q53GS7 698 aaKnown RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 TTC19Q6DKK2 380 aaPredicted RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 TMEM270Q6UE05 265 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 FMNL3Q8IVF7 1028 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 RHOT2Q8IXI1 618 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 ZNF564Q8TBZ8 553 aaPredicted RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 CENPHQ9H3R5 247 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 GDF3Q9NR23 364 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 TMEM59LQ9UK28 342 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 COQ4Q9Y3A0 265 aa13.32□□□□□ -0.28
CIITA-212ENST00000618207 DICER1Q9UPY3 1922 aaKnown RBP13.32□□□□□ -0.28
CIITA-212ENST00000618207 CLDN3O15551 220 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 CAPN2P17655 700 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 EPHX2P34913 555 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 ARL2P36404 184 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 PAK2Q13177 524 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 FAM160B1Q5W0V3 765 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 DPY19L2Q6NUT2 758 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 METTL7BQ6UX53 244 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 THNSL1Q8IYQ7 743 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 PPP1R13LQ8WUF5 828 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 NEUROG2Q9H2A3 272 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 CNOT8Q9UFF9 292 aaKnown RBP13.31□□□□□ -0.28
CIITA-212ENST00000618207 VNN1O95497 513 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 POTEJP0CG39 1038 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 TXNP10599 105 aaKnown RBP13.31□□□□□ -0.28
CIITA-212ENST00000618207 CLCN3P51790 818 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 CDR2Q01850 454 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 FAM43BQ6ZT52 329 aaPredicted RBP13.31□□□□□ -0.28
CIITA-212ENST00000618207 ZIM3Q96PE6 472 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 VIPAS39Q9H9C1 493 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 MED4Q9NPJ6 270 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 AGTPBP1Q9UPW5 1226 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 SPDYE5A6NIY4 337 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 INO80B-WBP1J3KQ70 363 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 HSF2BPO75031 334 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 CD58P19256 250 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 RTP1P59025 263 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 EMBQ6PCB8 327 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 CEP120Q8N960 986 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 ARL8AQ96BM9 186 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 FGD4Q96M96 766 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 CEP89Q96ST8 783 aa13.31□□□□□ -0.28
CIITA-212ENST00000618207 INO80BQ9C086 356 aaPredicted RBP13.31□□□□□ -0.28
CIITA-212ENST00000618207 APOBEC3GQ9HC16 384 aaKnown RBP13.31□□□□□ -0.28
CIITA-212ENST00000618207 PCDHB4Q9Y5E5 795 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms