RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PPP2R5AQ15172 486 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 NAB2Q15742 525 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 TMEM132AQ24JP5 1023 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 PRSS55Q6UWB4 352 aaPredicted RBP20.88■□□□□ 0.93
CDX1-202ENST00000616154 DEPTORQ8TB45 409 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 ADPGKQ9BRR6 497 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 TTPALQ9BTX7 342 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 SMC3Q9UQE7 1217 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 STK24Q9Y6E0 443 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 PTPRZ1P23471 2315 aaPredicted RBP20.88■□□□□ 0.93
CDX1-202ENST00000616154 FAM186AA6NE01 2351 aa20.88■□□□□ 0.93
CDX1-202ENST00000616154 ZMYND10O75800 440 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 EDN1P05305 212 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 THP07101 528 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 SIX5Q8N196 739 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 HASPINQ8TF76 798 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 RSAD2Q8WXG1 361 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 PIK3R5Q8WYR1 880 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 RTP3Q9BQQ7 232 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.87■□□□□ 0.93
CDX1-202ENST00000616154 WNT16Q9UBV4 365 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 FBXW11Q9UKB1 542 aa20.87■□□□□ 0.93
CDX1-202ENST00000616154 K7ELQ4 463 aaPredicted RBP20.86■□□□□ 0.93
CDX1-202ENST00000616154 ELAVL2Q12926 359 aaKnown RBP20.86■□□□□ 0.93
CDX1-202ENST00000616154 DCAF4L1Q3SXM0 396 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 FAM171A1Q5VUB5 890 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 EEF1DP3Q658K8 133 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 CCDC105Q8IYK2 499 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 SLC44A3Q8N4M1 653 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 LNX1Q8TBB1 728 aaPredicted RBP20.86■□□□□ 0.93
CDX1-202ENST00000616154 CLSTN3Q9BQT9 956 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 CXCL16Q9H2A7 254 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 USP20Q9Y2K6 914 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 VPS13AQ96RL7 3174 aa20.86■□□□□ 0.93
CDX1-202ENST00000616154 PI15O43692 258 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 SRFP11831 508 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 LAMP2P13473 410 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 ANP32AP39687 249 aaKnown RBP20.85■□□□□ 0.93
CDX1-202ENST00000616154 EFNA5P52803 228 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 ATP2C1P98194 919 aaPredicted RBP20.85■□□□□ 0.93
CDX1-202ENST00000616154 PSMD5Q16401 504 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 ECM1Q16610 540 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 GET4Q7L5D6 327 aaPredicted RBP20.85■□□□□ 0.93
CDX1-202ENST00000616154 KIFAP3Q92845 792 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 IFT74Q96LB3 600 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 KIFC3Q9BVG8 833 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 RAB34Q9BZG1 259 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 BHMT2Q9H2M3 363 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 LRWD1Q9UFC0 647 aa20.85■□□□□ 0.93
CDX1-202ENST00000616154 H3BQV1 296 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 CFHP08603 1231 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 LIG1P18858 919 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 CCT6AP40227 531 aaKnown RBP20.84■□□□□ 0.93
CDX1-202ENST00000616154 IL17AQ16552 155 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 PDXDC1Q6P996 788 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 CEP57Q86XR8 500 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 HSCBQ8IWL3 235 aa20.84■□□□□ 0.93
CDX1-202ENST00000616154 MYH15Q9Y2K3 1946 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 KRBA1A5PL33 1030 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 PRR23AA6NEV1 266 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 ANHXE9PGG2 379 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 TMEM189-UBE2V1I3L0A0 370 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 HNRNPA1P09651 372 aaKnown RBP eCLIP20.83■□□□□ 0.93
CDX1-202ENST00000616154 HTR4Q13639 388 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 NT5DC1Q5TFE4 455 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 LIN9Q5TKA1 542 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 ATF7IP2Q5U623 682 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 LARP1BQ659C4 914 aaKnown RBP20.83■□□□□ 0.93
CDX1-202ENST00000616154 MCTP1Q6DN14 999 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.83■□□□□ 0.93
CDX1-202ENST00000616154 ASCL5Q7RTU5 278 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 DTWD2Q8NBA8 298 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 GDAQ9Y2T3 454 aa20.83■□□□□ 0.93
CDX1-202ENST00000616154 ZFP37Q9Y6Q3 630 aaPredicted RBP20.83■□□□□ 0.93
CDX1-202ENST00000616154 SPTBN4Q9H254 2564 aa20.83■□□□□ 0.92
CDX1-202ENST00000616154 FSHRP23945 695 aa20.82■□□□□ 0.92
CDX1-202ENST00000616154 HOXA9P31269 272 aa20.82■□□□□ 0.92
CDX1-202ENST00000616154 ARL6IP4Q66PJ3 421 aaKnown RBP20.82■□□□□ 0.92
CDX1-202ENST00000616154 APBB1IPQ7Z5R6 666 aaPredicted RBP20.82■□□□□ 0.92
CDX1-202ENST00000616154 INTS4Q96HW7 963 aaKnown RBP20.82■□□□□ 0.92
CDX1-202ENST00000616154 PPP1R10Q96QC0 940 aaKnown RBP20.82■□□□□ 0.92
CDX1-202ENST00000616154 POLD4Q9HCU8 107 aa20.82■□□□□ 0.92
CDX1-202ENST00000616154 KIAA1024Q9UPX6 916 aa20.82■□□□□ 0.92
CDX1-202ENST00000616154 CITO14578 2027 aa20.82■□□□□ 0.92
CDX1-202ENST00000616154 ADAM12O43184 909 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 C8AP07357 584 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 FGFR3P22607 806 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 BECN1Q14457 450 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 PPM1LQ5SGD2 360 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 HYIQ5T013 277 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 DTHD1Q6ZMT9 781 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 BRAPQ7Z569 592 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 FRMD5Q7Z6J6 570 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 KCTD17Q8N5Z5 321 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 MMTAG2Q9BU76 263 aaKnown RBP20.81■□□□□ 0.92
CDX1-202ENST00000616154 DDX19AQ9NUU7 478 aaKnown RBP20.81■□□□□ 0.92
CDX1-202ENST00000616154 CA14Q9ULX7 337 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 TNFSF13BQ9Y275 285 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 NOTCH4Q99466 2003 aa20.81■□□□□ 0.92
CDX1-202ENST00000616154 PHLPP2Q6ZVD8 1323 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms