RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ADAMTS19Q8TE59 1207 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 DRC1Q96MC2 740 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 NSUN3Q9H649 340 aaKnown RBP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 MRPL44Q9H9J2 332 aaKnown RBP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 KBTBD4Q9NVX7 518 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 COL4A3Q01955 1670 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 NOTCH4Q99466 2003 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 FSCN2O14926 492 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 HNRNPDLO14979 420 aaKnown RBP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 CLIC2O15247 247 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 PPP6R2O75170 966 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 GCNT3O95395 438 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 NFICP08651 508 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 MATR3P43243 847 aaKnown RBP eCLIP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 POU5F1BQ06416 359 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 COASYQ13057 564 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 KCNC3Q14003 757 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 SYCE2Q6PIF2 218 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 BICD1Q96G01 975 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 PPP1R10Q96QC0 940 aaKnown RBP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 POP1Q99575 1024 aaKnown RBP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 PANK4Q9NVE7 773 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 SPG21Q9NZD8 308 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 TNFSF13BQ9Y275 285 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 FAN1Q9Y2M0 1017 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 LACTBL1A8MY62 500 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 SPTLC1O15269 473 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 KLRC4O43908 158 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 PPP1R37O75864 691 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 YEATS4O95619 227 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 RPLP2P05387 115 aaKnown RBP6.24□□□□□ -1.41
CPNE3-208ENST00000614678 STK4Q13043 487 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 PTPN14Q15678 1187 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 SV2BQ7L1I2 683 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 P2RX5Q93086 422 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 STRA6Q9BX79 667 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 ZBP1Q9H171 429 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 TLE6Q9H808 572 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 KCNH3Q9ULD8 1083 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 PHLPP2Q6ZVD8 1323 aa6.24□□□□□ -1.41
CPNE3-208ENST00000614678 EFEMP2O95967 443 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 OR4Q2P0C623 313 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 LAG3P18627 525 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 MUTP22033 750 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TKTP29401 623 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 CASP4P49662 377 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 ADAM15Q13444 863 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TMC5Q6UXY8 1006 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 MRPL43Q8N983 215 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TMEM169Q96HH4 297 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TMEM209Q96SK2 561 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 MRPL4Q9BYD3 311 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TEX28O15482 410 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 B3GAT3O94766 335 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 ALDH2P05091 517 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 NDUFV1P49821 464 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 CDC42EP1Q00587 391 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 MPZL3Q6UWV2 235 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 EFCAB13Q8IY85 973 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 KIAA0895Q8NCT3 520 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PAGE5Q96GU1 130 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 SNX27Q96L92 541 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PRIMPOLQ96LW4 560 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 ZNF396Q96N95 335 aaPredicted RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PPME1Q9Y570 386 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PDCD11Q14690 1871 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 FAM86C2PA6NEL3 165 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 CLDN3O15551 220 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 CUTAO60888 179 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 LILRB3O75022 631 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 CLASP2O75122 1294 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 ASIC1P78348 528 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 GTF2BQ00403 316 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PLCB3Q01970 1234 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PNOCQ13519 176 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 NOLC1Q14978 699 aaKnown RBP eCLIP6.23□□□□□ -1.415e-11■■■■■ 37.1
CPNE3-208ENST00000614678 FAM171A1Q5VUB5 890 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 JADE1Q6IE81 842 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PTCRAQ6ISU1 281 aaPredicted RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 GPIHBP1Q8IV16 184 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 SLC22A17Q8WUG5 538 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 SPIRE2Q8WWL2 714 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 MSLNLQ96KJ4 702 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 GZF1Q9H116 711 aaPredicted RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TMEM134Q9H6X4 195 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TOPORSQ9NS56 1045 aaPredicted RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 LARSQ9P2J5 1176 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 HPSEQ9Y251 543 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 WDFY3Q8IZQ1 3526 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TGFB1I1O43294 461 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TBCAO75347 108 aaKnown RBP6.23□□□□□ -1.41
CPNE3-208ENST00000614678 TOM1L1O75674 476 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 RB1P06400 928 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 THP07101 528 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 LIG4P49917 911 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 RAB27AP51159 221 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 PPP2R5AQ15172 486 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 UPP1Q16831 310 aa6.23□□□□□ -1.41
CPNE3-208ENST00000614678 FUT10Q6P4F1 479 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms