RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 OGTO15294 1046 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 ACTN4O43707 911 aaKnown RBP18.4■□□□□ 0.54
TRIM28-215ENST00000601150 CLTAP09496 248 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 MYBP10242 640 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 CTSAP10619 480 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 GTF2F1P35269 517 aaKnown RBP eCLIP18.4■□□□□ 0.545e-6■■□□□ 13.8
TRIM28-215ENST00000601150 SYKP43405 635 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 AFMP43652 599 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 CASP5P51878 434 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 TFF2Q03403 129 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 NAB2Q15742 525 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 SEZ6Q53EL9 994 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 GLRA4Q5JXX5 417 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 L1TD1Q5T7N2 865 aaKnown RBP18.4■□□□□ 0.54
TRIM28-215ENST00000601150 SLFN12LQ6IEE8 588 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 SLC39A4Q6P5W5 647 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 ALKAL1Q6UXT8 129 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 EP400NLQ6ZTU2 488 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 STXBP4Q6ZWJ1 553 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 RBM23Q86U06 439 aaKnown RBP18.4■□□□□ 0.54
TRIM28-215ENST00000601150 MRPL43Q8N983 215 aaKnown RBP18.4■□□□□ 0.54
TRIM28-215ENST00000601150 ASB2Q96Q27 587 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 CDCA3Q99618 268 aaPredicted RBP18.4■□□□□ 0.54
TRIM28-215ENST00000601150 MSTO1Q9BUK6 570 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 VN1R3Q9BXE9 311 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 CLDND1Q9NY35 253 aa18.4■□□□□ 0.54
TRIM28-215ENST00000601150 SMIM28A0A1B0GU29 152 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 CASTOR2A6NHX0 329 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 HIDE1A8MVS5 230 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 CXCL14O95715 111 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 KCNE1P15382 129 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 CA8P35219 290 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 NDUFA8P51970 172 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 HSP90AA2PQ14568 343 aaPredicted RBP18.39■□□□□ 0.53
TRIM28-215ENST00000601150 DUSP6Q16828 381 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 CTC1Q2NKJ3 1217 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 TPRNQ4KMQ1 711 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 UNC13DQ70J99 1090 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 EFHBQ8N7U6 833 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 FSIP1Q8NA03 581 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 BLZF1Q9H2G9 400 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 CNTN3Q9P232 1028 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 ANK1P16157 1881 aa18.39■□□□□ 0.53
TRIM28-215ENST00000601150 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-215ENST00000601150 C2orf71A6NGG8 1288 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 F8W810 466 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 PER2O15055 1255 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 TADA2AO75478 443 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 KCNA5P22460 613 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 CASP1P29466 404 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 ADAM15Q13444 863 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 SLC10A6Q3KNW5 377 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 GRAMD1CQ8IYS0 662 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 RABGGTAQ92696 567 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 PAGE5Q96GU1 130 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 UROC1Q96N76 676 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 PAAF1Q9BRP4 392 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 HERC2P3Q9BVR0 1158 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 FGFBP2Q9BYJ0 223 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 TMEM206Q9H813 350 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 PLEKHA5Q9HAU0 1116 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 SLC38A7Q9NVC3 462 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 CACNG4Q9UBN1 327 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 ADAM28Q9UKQ2 775 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 IRAK3Q9Y616 596 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 STYXL1Q9Y6J8 313 aa18.38■□□□□ 0.53
TRIM28-215ENST00000601150 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-215ENST00000601150 PVALEFA0A1B0GWK0 134 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 TISP43B9A030 160 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 LINC01565O15544 149 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 MEFVO15553 781 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-215ENST00000601150 FAM189A1O60320 539 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 EFEMP2O95967 443 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 SOD2P04179 222 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 CXCL8P10145 99 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 TNFSF9P41273 254 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 KCNA1Q09470 495 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 CUL4BQ13620 913 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 POSTNQ15063 836 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 TJAP1Q5JTD0 557 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 FAM26FQ5R3K3 315 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 RNF168Q8IYW5 571 aaPredicted RBP18.37■□□□□ 0.53
TRIM28-215ENST00000601150 SYCP3Q8IZU3 236 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 AUTS2Q8WXX7 1259 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 POMGNT1Q8WZA1 660 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 HPS3Q969F9 1004 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 ZMAT2Q96NC0 199 aaKnown RBP18.37■□□□□ 0.53
TRIM28-215ENST00000601150 IKZF4Q9H2S9 585 aa18.37■□□□□ 0.53
TRIM28-215ENST00000601150 RPF1Q9H9Y2 349 aaKnown RBP18.37■□□□□ 0.53
TRIM28-215ENST00000601150 TTC26A0AVF1 554 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 GOLGA6L4A6NEF3 574 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 EIF3DO15371 548 aaKnown RBP eCLIP18.36■□□□□ 0.53
TRIM28-215ENST00000601150 SF3B1O75533 1304 aaKnown RBP eCLIP18.36■□□□□ 0.533e-6■■■■■ 65.8
TRIM28-215ENST00000601150 PRPF6O94906 941 aaKnown RBP18.36■□□□□ 0.53
TRIM28-215ENST00000601150 KIF4AO95239 1232 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 URODP06132 367 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 LTBRP36941 435 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 NDUFV1P49821 464 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 PPP2R3AQ06190 1150 aa18.36■□□□□ 0.53
TRIM28-215ENST00000601150 PTPN14Q15678 1187 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms