RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 SSBP05455 408 aaKnown RBP eCLIP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 MYL1P05976 194 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 BMP6P22004 513 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CDC42EP1Q00587 391 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 KRT17Q04695 432 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 MTMR3Q13615 1198 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CAPSQ13938 189 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 NOMO2Q5JPE7 1267 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 PDE12Q6L8Q7 609 aaKnown RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 DYMQ7RTS9 669 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 SRGAP1Q7Z6B7 1085 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 MRPL10Q7Z7H8 261 aaKnown RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CDR2LQ86X02 465 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 VPS52Q8N1B4 723 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 C12orf76Q8N812 135 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 SMG8Q8ND04 991 aaKnown RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 FLCNQ8NFG4 579 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 SPIRE2Q8WWL2 714 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 PSPC1Q8WXF1 523 aaKnown RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 ERCC4Q92889 916 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 IGSF21Q96ID5 467 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CPB2Q96IY4 423 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CDCA3Q99618 268 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 JPH2Q9BR39 696 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 NFKBIZQ9BYH8 718 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 FGFBP2Q9BYJ0 223 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 INO80BQ9C086 356 aaPredicted RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 ZBP1Q9H171 429 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 MFSD1Q9H3U5 465 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 CLSTN2Q9H4D0 955 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 ST6GALNAC4Q9H4F1 302 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 POMKQ9H5K3 350 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 C17orf75Q9HAS0 396 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 NGRNQ9NPE2 291 aaKnown RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 TMEM63CQ9P1W3 806 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 PUF60Q9UHX1 559 aaKnown RBP9.62□□□□□ -0.87
TRIM28-214ENST00000600840 HES2Q9Y543 173 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 PCDHA5Q9Y5H7 936 aa9.62□□□□□ -0.87
TRIM28-214ENST00000600840 TDRD15B5MCY1 1934 aaKnown RBP9.61□□□□□ -0.87
TRIM28-214ENST00000600840 TTLL13PA6NNM8 815 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 F8W810 466 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 GOLGA6L22H0YM25 854 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 PPP1R37O75864 691 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 PLS3P13797 630 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 EPCAMP16422 314 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 PPM1AP35813 382 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 NPTX2P47972 431 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 ALDH7A1P49419 539 aaKnown RBP9.61□□□□□ -0.87
TRIM28-214ENST00000600840 NCKAP1LP55160 1127 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 AMPD3Q01432 767 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 RAD51AP2Q09MP3 1159 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 PNOCQ13519 176 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 POSTNQ15063 836 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 AMHR2Q16671 573 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 KLHL40Q2TBA0 621 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 CDCA2Q69YH5 1023 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-214ENST00000600840 UNC13DQ70J99 1090 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 MAEAQ7L5Y9 396 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 EPM2AIP1Q7L775 607 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-214ENST00000600840 TAS1R3Q7RTX0 852 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 TAS1R1Q7RTX1 841 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 UBALD2Q8IYN6 164 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 CEP57L1Q8IYX8 460 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 RASSF8Q8NHQ8 419 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 TCP11Q8WWU5 503 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 KIFAP3Q92845 792 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 LRRC27Q9C0I9 530 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 POLR3FQ9H1D9 316 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-214ENST00000600840 OLFML3Q9NRN5 406 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 ARHGAP28Q9P2N2 729 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 C2orf16Q68DN1 1984 aa9.61□□□□□ -0.87
TRIM28-214ENST00000600840 B4GALT5O43286 388 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 TSPAN1O60635 241 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 RHOBTB3O94955 611 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 MBD3O95983 291 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 POMCP01189 267 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 RPN1P04843 607 aaKnown RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 EDN1P05305 212 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 CTSAP10619 480 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 MAPTP10636 758 aaKnown RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 CA8P35219 290 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 HOXD13P35453 343 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 NAMPTP43490 491 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 CASP5P51878 434 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 PTENP60484 403 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 MBTD1Q05BQ5 628 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 MXD4Q14582 209 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 SMC1AQ14683 1233 aaKnown RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 KCNB1Q14721 858 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 ANGPT1Q15389 498 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 SKOR2Q2VWA4 1001 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 KMT5BQ4FZB7 885 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 L1TD1Q5T7N2 865 aaKnown RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 GLB1LQ6UWU2 654 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 ZNF720Q7Z2F6 126 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 DDX53Q86TM3 631 aaKnown RBP9.6□□□□□ -0.87
TRIM28-214ENST00000600840 TMEM161BQ8NDZ6 487 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 GLIS3Q8NEA6 775 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 SLC22A17Q8WUG5 538 aa9.6□□□□□ -0.87
TRIM28-214ENST00000600840 HPS3Q969F9 1004 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms