RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 AARSP49588 968 aaKnown RBP eCLIP21.61■■□□□ 1.054e-6■■■■□ 24
UPF1-207ENST00000599848 TMPRSS15P98073 1019 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 MAP3K10Q02779 954 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 NECTIN1Q15223 517 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 C9orf131Q5VYM1 1079 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 VSTM4Q8IW00 320 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 ENTPD7Q9NQZ7 604 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 DSEQ9UL01 958 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 SUPT3HO75486 399 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 DCTN3O75935 186 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 CDC25AP30304 524 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 ATICP31939 592 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 ACTR2P61160 394 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 CUL4AQ13619 759 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 C4orf22Q6V702 233 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 TARSL2A2RTX5 802 aaKnown RBP21.61■■□□□ 1.05
UPF1-207ENST00000599848 EFHC1Q5JVL4 640 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 KCNQ2O43526 872 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 NDUFB10O96000 172 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 ATP1A2P50993 1020 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 C16orf72Q14CZ0 275 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 EMC2Q15006 297 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 WDR72Q3MJ13 1102 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 PID1Q7Z2X4 250 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 RASSF3Q86WH2 238 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 BCAS4Q8TDM0 211 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 VPS11Q9H270 941 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 MRPL46Q9H2W6 279 aaKnown RBP21.61■■□□□ 1.05
UPF1-207ENST00000599848 ANKEF1Q9NU02 776 aa21.61■■□□□ 1.05
UPF1-207ENST00000599848 AFF4Q9UHB7 1163 aaKnown RBP21.61■■□□□ 1.05
UPF1-207ENST00000599848 PKN3Q6P5Z2 889 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 ELOA2Q8IYF1 753 aaPredicted RBP21.6■■□□□ 1.05
UPF1-207ENST00000599848 RAPGEF5Q92565 580 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 KRT87PA6NCN2 255 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 FGGP02679 453 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 IGKV5-2P06315 115 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 ESRRAP11474 423 aaPredicted RBP21.6■■□□□ 1.05
UPF1-207ENST00000599848 LCP1P13796 627 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 EMILIN2Q9BXX0 1053 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 VPS33BQ9H267 617 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 C17orf75Q9HAS0 396 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 GARTP22102 1010 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 ETFBP38117 255 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 RESTQ13127 1097 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 KRT72Q14CN4 511 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 IL31Q6EBC2 164 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 YME1L1Q96TA2 773 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 FAM50BQ9Y247 325 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 PDS5AQ29RF7 1337 aaKnown RBP21.6■■□□□ 1.05
UPF1-207ENST00000599848 MAPK13O15264 365 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 MUTP22033 750 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 KCNA1Q09470 495 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 ATP11CQ8NB49 1132 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 NUP85Q9BW27 656 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 ZCCHC11Q5TAX3 1644 aaKnown RBP21.6■■□□□ 1.05
UPF1-207ENST00000599848 SPATA31A5Q5VU36 1347 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 SPATA31A7Q8IWB4 1347 aa21.6■■□□□ 1.05
UPF1-207ENST00000599848 SPDYE5A6NIY4 337 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 PIK3R2O00459 728 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 TAF6P49848 677 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 CDH6P55285 790 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 KRT31Q15323 416 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 SPDYE7PQ495Y7 208 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 EMBQ6PCB8 327 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 ADCK2Q7Z695 626 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 ITIH5Q86UX2 942 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 SLC44A5Q8NCS7 719 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 MOV10L1Q9BXT6 1211 aaKnown RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 MAP3K13O43283 966 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 KCNA2P16389 499 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 CHRNA3P32297 505 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 IFNAR2P48551 515 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 DPCR1Q3MIW9 517 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 FAM117BQ6P1L5 589 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 SGMS1Q86VZ5 419 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 TBC1D10CQ8IV04 446 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 AKAP7Q9P0M2 348 aaPredicted RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 NEDD4P46934 1319 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 ZC3H12BQ5HYM0 836 aaKnown RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 PASD1Q8IV76 773 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 NSUN4Q96CB9 384 aaKnown RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 THG1LQ9NWX6 298 aaKnown RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 GRIN1Q05586 938 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 TRIP13Q15645 432 aaPredicted RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 SLFNL1Q499Z3 407 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 OSCP1Q8WVF1 389 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 NT5C1AQ9BXI3 368 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 FAF1Q9UNN5 650 aaPredicted RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 C1orf167Q5SNV9 1468 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 ANO9A1A5B4 782 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 C5orf58C9J3I9 102 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 SMAPO00193 183 aa21.59■■□□□ 1.05
UPF1-207ENST00000599848 CDK5RAP1Q96SZ6 601 aaKnown RBP21.59■■□□□ 1.05
UPF1-207ENST00000599848 POTEFA5A3E0 1075 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 POTEIP0CG38 1075 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 HMOX2P30519 316 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 RBBP7Q16576 425 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 ATF7IP2Q5U623 682 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 POTEGQ6S5H5 508 aa21.58■■□□□ 1.05
UPF1-207ENST00000599848 POTEEQ6S8J3 1075 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms