RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 IPO9Q96P70 1041 aaKnown RBP21.32■■□□□ 1
SHKBP1-221ENST00000599833 GBP3Q9H0R5 595 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 SPG21Q9NZD8 308 aa21.32■■□□□ 1
SHKBP1-221ENST00000599833 MUC3AQ02505 3323 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 EIF3DO15371 548 aaKnown RBP eCLIP21.31■■□□□ 1
SHKBP1-221ENST00000599833 MYL1P05976 194 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 HARSP12081 509 aaKnown RBP21.31■■□□□ 1
SHKBP1-221ENST00000599833 KCNE1P15382 129 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 PPM1AP35813 382 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 RNASELQ05823 741 aaKnown RBP21.31■■□□□ 1
SHKBP1-221ENST00000599833 SOX4Q06945 474 aaPredicted RBP21.31■■□□□ 1
SHKBP1-221ENST00000599833 BMT2Q1RMZ1 405 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 KMT5BQ4FZB7 885 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 GLRA4Q5JXX5 417 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 CRELD2Q6UXH1 353 aaPredicted RBP21.31■■□□□ 1
SHKBP1-221ENST00000599833 BICD1Q96G01 975 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 TCHPQ9BT92 498 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 CCDC94Q9BW85 323 aaPredicted RBP21.31■■□□□ 1
SHKBP1-221ENST00000599833 CPSF3Q9UKF6 684 aaKnown RBP21.31■■□□□ 1
SHKBP1-221ENST00000599833 PCDHB13Q9Y5F0 798 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 VWA8A3KMH1 1905 aa21.31■■□□□ 1
SHKBP1-221ENST00000599833 SMIM28A0A1B0GU29 152 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 TTC26A0AVF1 554 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 OGTO15294 1046 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 NR1I2O75469 434 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 CXCL8P10145 99 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 ALDH7A1P49419 539 aaKnown RBP21.3■■□□□ 1
SHKBP1-221ENST00000599833 FAM160A1Q05DH4 1040 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 STK4Q13043 487 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 ENOX2Q16206 610 aaKnown RBP21.3■■□□□ 1
SHKBP1-221ENST00000599833 CD300LGQ6UXG3 332 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 APBB1IPQ7Z5R6 666 aaPredicted RBP21.3■■□□□ 1
SHKBP1-221ENST00000599833 ADGRD2Q7Z7M1 963 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 TMEM130Q8N3G9 435 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 ACAP3Q96P50 834 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 ACCSQ96QU6 501 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 PRDM6Q9NQX0 595 aa21.3■■□□□ 1
SHKBP1-221ENST00000599833 TGFB1I1O43294 461 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 CLTAP09496 248 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 TUSC3Q13454 348 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 CCDC85BQ15834 202 aaPredicted RBP21.29■■□□□ 1
SHKBP1-221ENST00000599833 PTPROQ16827 1216 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 RABGGTAQ92696 567 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 RPS6KC1Q96S38 1066 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 SLC39A2Q9NP94 309 aa21.29■■□□□ 1
SHKBP1-221ENST00000599833 RPN1P04843 607 aaKnown RBP21.28■■□□□ 1
SHKBP1-221ENST00000599833 THP07101 528 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 WNT7BP56706 349 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 ZBTB6Q15916 424 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 TCEAL5Q5H9L2 206 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 DDX53Q86TM3 631 aaKnown RBP21.28■■□□□ 1
SHKBP1-221ENST00000599833 SPATA20Q8TB22 786 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 CBWD1Q9BRT8 395 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 ZBP1Q9H171 429 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 TLR9Q9NR96 1032 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 FAN1Q9Y2M0 1017 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 UBE4BO95155 1302 aa21.28■■□□□ 1
SHKBP1-221ENST00000599833 RHOBTB3O94955 611 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 ALDH2P05091 517 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 OR1G1P47890 313 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 TIGD5Q53EQ6 642 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 SLFN12LQ6IEE8 588 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 TAS1R1Q7RTX1 841 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 MICALL1Q8N3F8 863 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 TIGD1Q96MW7 591 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 MSTO1Q9BUK6 570 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 NSUN3Q9H649 340 aaKnown RBP21.27■■□□□ 1
SHKBP1-221ENST00000599833 TMEM206Q9H813 350 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 GOLGA2P5Q9HBQ8 144 aa21.27■■□□□ 1
SHKBP1-221ENST00000599833 TOPORSQ9NS56 1045 aaPredicted RBP21.27■■□□□ 1
SHKBP1-221ENST00000599833 AGO2Q9UKV8 859 aaKnown RBP21.27■■□□□ 1
SHKBP1-221ENST00000599833 PRG3Q9Y2Y8 225 aaPredicted RBP21.27■■□□□ 1
SHKBP1-221ENST00000599833 CARNS1A5YM72 827 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 CASTOR2A6NHX0 329 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 LACTBL1A8MY62 500 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 CSPG5O95196 566 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 GARTP22102 1010 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 GTF2F1P35269 517 aaKnown RBP eCLIP21.26■□□□□ 0.991e-6■■■■■ 54.6
SHKBP1-221ENST00000599833 ACOT2P49753 483 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 YARSP54577 528 aaKnown RBP21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 HYAL1Q12794 435 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 POSTNQ15063 836 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 C3orf58Q8NDZ4 430 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 PPM1EQ8WY54 764 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 C18orf25Q96B23 403 aaPredicted RBP21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 TMEM169Q96HH4 297 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 FAM193BQ96PV7 902 aaPredicted RBP21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 PLEKHA5Q9HAU0 1116 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 EXOC7Q9UPT5 735 aa21.26■□□□□ 0.99
SHKBP1-221ENST00000599833 HIDE1A8MVS5 230 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 LILRB3O75022 631 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 KIF4AO95239 1232 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 MATR3P43243 847 aaKnown RBP eCLIP21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 PSMD2Q13200 908 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 PNOCQ13519 176 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 KCNB1Q14721 858 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 UPP1Q16831 310 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 CTC1Q2NKJ3 1217 aa21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 ELOA2Q8IYF1 753 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-221ENST00000599833 POMGNT1Q8WZA1 660 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms