RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 TOPORSQ9NS56 1045 aaPredicted RBP10.77□□□□□ -0.69
VRK3-216ENST00000599342 IGSF9Q9P2J2 1179 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 FBXL21Q9UKT6 434 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 DUSP12Q9UNI6 340 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 TNFSF13BQ9Y275 285 aa10.77□□□□□ -0.69
VRK3-216ENST00000599342 PLXNA3P51805 1871 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 KMT2EQ8IZD2 1858 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 B3GAT3O94766 335 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 GJB2P29033 226 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 CDC25AP30304 524 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 ATP2C1P98194 919 aaPredicted RBP10.76□□□□□ -0.69
VRK3-216ENST00000599342 TCF15Q12870 199 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 STRN3Q13033 797 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.76□□□□□ -0.69
VRK3-216ENST00000599342 GET4Q7L5D6 327 aaPredicted RBP10.76□□□□□ -0.69
VRK3-216ENST00000599342 ZNF707Q96C28 371 aaPredicted RBP10.76□□□□□ -0.69
VRK3-216ENST00000599342 TMX3Q96JJ7 454 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 UROC1Q96N76 676 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 TCHPQ9BT92 498 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 RUSC1Q9BVN2 902 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 PRKD2Q9BZL6 878 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 NT5C3AQ9H0P0 336 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 TMEM134Q9H6X4 195 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 KCNG1Q9UIX4 513 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 FBXW11Q9UKB1 542 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 RBM19Q9Y4C8 960 aaKnown RBP10.76□□□□□ -0.69
VRK3-216ENST00000599342 C2orf16Q68DN1 1984 aa10.76□□□□□ -0.69
VRK3-216ENST00000599342 ZNF318Q5VUA4 2279 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 VWA3AA6NCI4 1184 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 TMEM189-UBE2V1I3L0A0 370 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 TRAPPC3O43617 180 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 ZMYND10O75800 440 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 C8AP07357 584 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 GRM5P41594 1212 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 MCM2P49736 904 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 CLCNKBP51801 687 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 OSTNP61366 133 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 NAB2Q15742 525 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 IL17AQ16552 155 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 PPM1LQ5SGD2 360 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 ASTLQ6HA08 431 aaPredicted RBP10.75□□□□□ -0.69
VRK3-216ENST00000599342 RINT1Q6NUQ1 792 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 LILRA6Q6PI73 481 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 DCLRE1AQ6PJP8 1040 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 C1orf186Q6ZWK4 172 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 KCTD17Q8N5Z5 321 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 FLCNQ8NFG4 579 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 LNX1Q8TBB1 728 aaPredicted RBP10.75□□□□□ -0.69
VRK3-216ENST00000599342 ATOH1Q92858 354 aaPredicted RBP10.75□□□□□ -0.69
VRK3-216ENST00000599342 NXPE3Q969Y0 559 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 PPP1R10Q96QC0 940 aaKnown RBP10.75□□□□□ -0.69
VRK3-216ENST00000599342 ACO2Q99798 780 aaKnown RBP10.75□□□□□ -0.69
VRK3-216ENST00000599342 CLSTN3Q9BQT9 956 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 CDT1Q9H211 546 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 CXCL16Q9H2A7 254 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 SLC38A7Q9NVC3 462 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.75□□□□□ -0.69
VRK3-216ENST00000599342 ARHGAP28Q9P2N2 729 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 EPS15L1Q9UBC2 864 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 SMC3Q9UQE7 1217 aa10.75□□□□□ -0.69
VRK3-216ENST00000599342 SLC16A4O15374 487 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 GALR2O43603 387 aaPredicted RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 N4BP1O75113 896 aaKnown RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 XYLBO75191 536 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 PAPLNO95428 1278 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 HNRNPA1P09651 372 aaKnown RBP eCLIP10.74□□□□□ -0.69
VRK3-216ENST00000599342 MCF2P10911 925 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 HARSP12081 509 aaKnown RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 RFX1P22670 979 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 GUCY2CP25092 1073 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 CLCN5P51795 746 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 SMTNP53814 917 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 RAD51AP2Q09MP3 1159 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 UPP1Q16831 310 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 HYIQ5T013 277 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 ARL6IP4Q66PJ3 421 aaKnown RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 MPZL3Q6UWV2 235 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 ANKS3Q6ZW76 656 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 KCNK18Q7Z418 384 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 DAW1Q8N136 415 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 TMEM105Q8N8V8 129 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 CEP120Q8N960 986 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 DDX27Q96GQ7 796 aaKnown RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 ACAP3Q96P50 834 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 MYADMQ96S97 322 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 PHOX2BQ99453 314 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 PLIN2Q99541 437 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 MMTAG2Q9BU76 263 aaKnown RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 TARS2Q9BW92 718 aaKnown RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 GOLGA2P5Q9HBQ8 144 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 PTPRHQ9HD43 1115 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 KCND2Q9NZV8 630 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 ANKFY1Q9P2R3 1169 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 POLIQ9UNA4 740 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.74□□□□□ -0.69
VRK3-216ENST00000599342 MUC6Q6W4X9 2439 aa10.74□□□□□ -0.69
VRK3-216ENST00000599342 WDFY4Q6ZS81 3184 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 SMIM28A0A1B0GU29 152 aa10.73□□□□□ -0.69
VRK3-216ENST00000599342 SFI1A8K8P3 1242 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms