RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 GPR65Q8IYL9 337 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 MYCT1Q8N699 235 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 CEP120Q8N960 986 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 B3GALT6Q96L58 329 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 ACAP3Q96P50 834 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 CXCL16Q9H2A7 254 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 SFXN1Q9H9B4 322 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 RXFP1Q9HBX9 757 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.73■□□□□ 0.27
TRIM28-203ENST00000593582 ANKFY1Q9P2R3 1169 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 DPP7Q9UHL4 492 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 TEX28O15482 410 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 CLDN3O15551 220 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 GPR37L1O60883 481 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 TBCAO75347 108 aaKnown RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 KIF4AO95239 1232 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 HARSP12081 509 aaKnown RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 PDIA4P13667 645 aaKnown RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 MTHFRP42898 656 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 ZNF131P52739 623 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 NCKAP1LP55160 1127 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 CREMQ03060 361 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 NOLC1Q14978 699 aaKnown RBP eCLIP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 SLC39A14Q15043 492 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 ATAT1Q5SQI0 421 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 USP49Q70CQ1 688 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 HAUS6Q7Z4H7 955 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 C12orf76Q8N812 135 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 HASPINQ8TF76 798 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 RIN2Q8WYP3 895 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 BICD1Q96G01 975 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 CLIC6Q96NY7 704 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 PPP1R10Q96QC0 940 aaKnown RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 USP28Q96RU2 1077 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 ZHX3Q9H4I2 956 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 SLC38A7Q9NVC3 462 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 STK17AQ9UEE5 414 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 MUTYHQ9UIF7 546 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 NR2E1Q9Y466 385 aa16.72■□□□□ 0.27
TRIM28-203ENST00000593582 MORC2Q9Y6X9 1032 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-203ENST00000593582 SMIM28A0A1B0GU29 152 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 ABLIM1O14639 778 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 TRAK2O60296 914 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 GLUD1P00367 558 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 MATR3P43243 847 aaKnown RBP eCLIP16.71■□□□□ 0.27
TRIM28-203ENST00000593582 ELAVL2Q12926 359 aaKnown RBP16.71■□□□□ 0.27
TRIM28-203ENST00000593582 HERC4Q5GLZ8 1057 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-203ENST00000593582 FAM171A1Q5VUB5 890 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 RRAGBQ5VZM2 374 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 ALKAL1Q6UXT8 129 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 TMC5Q6UXY8 1006 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 KRI1Q8N9T8 703 aaKnown RBP16.71■□□□□ 0.27
TRIM28-203ENST00000593582 KCNN1Q92952 543 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 ZBTB45Q96K62 511 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-203ENST00000593582 UROC1Q96N76 676 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 TTPALQ9BTX7 342 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 TSHZ2Q9NRE2 1034 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 CDH22Q9UJ99 828 aa16.71■□□□□ 0.27
TRIM28-203ENST00000593582 TRIOO75962 3097 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 FAM86C2PA6NEL3 165 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 K7ENM7 598 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 HNRNPDLO14979 420 aaKnown RBP16.7■□□□□ 0.26
TRIM28-203ENST00000593582 B3GAT3O94766 335 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 WEE2P0C1S8 567 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 ABCD1P33897 745 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 NASPP49321 788 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-203ENST00000593582 MCL1Q07820 350 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 STK38Q15208 465 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 XKR4Q5GH76 650 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 KANK3Q6NY19 840 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 DCLRE1AQ6PJP8 1040 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 CEP57Q86XR8 500 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 SNX27Q96L92 541 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 ZNF396Q96N95 335 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-203ENST00000593582 LRFN3Q9BTN0 628 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 POMKQ9H5K3 350 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 C11orf16Q9NQ32 467 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 MAN1C1Q9NR34 630 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 FNIP2Q9P278 1114 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 TBX20Q9UMR3 447 aa16.7■□□□□ 0.26
TRIM28-203ENST00000593582 TMEM189-UBE2V1I3L0A0 370 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 TRAPPC3O43617 180 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 C1RP00736 705 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 KCNE1P15382 129 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 COL9A1P20849 921 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 SP100P23497 879 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-203ENST00000593582 LIG4P49917 911 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 CLCNKBP51801 687 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 UPP1Q16831 310 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 RTP2Q5QGT7 225 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 PDXDC1Q6P996 788 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 CCDC73Q6ZRK6 1079 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 SV2BQ7L1I2 683 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 PALB2Q86YC2 1186 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 DDX27Q96GQ7 796 aaKnown RBP16.69■□□□□ 0.26
TRIM28-203ENST00000593582 CNTN3Q9P232 1028 aa16.69■□□□□ 0.26
TRIM28-203ENST00000593582 KYAT1Q16773 422 aa16.68■□□□□ 0.26
TRIM28-203ENST00000593582 PRSS55Q6UWB4 352 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-203ENST00000593582 C15orf39Q6ZRI6 1047 aa16.68■□□□□ 0.26
TRIM28-203ENST00000593582 GPR149Q86SP6 731 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms