RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TCEAL1Q15170 157 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 GJC2Q5T442 439 aaPredicted RBP15.28■□□□□ 0.04
LIG3-205ENST00000585941 CCDC181Q5TID7 509 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 ATF7IP2Q5U623 682 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 CCDC70Q6NSX1 233 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 RHOT2Q8IXI1 618 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 TPCN2Q8NHX9 752 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 NPLOC4Q8TAT6 608 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 NLRP4Q96MN2 994 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 MMS19Q96T76 1030 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 INO80BQ9C086 356 aaPredicted RBP15.28■□□□□ 0.04
LIG3-205ENST00000585941 ISCUQ9H1K1 167 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 CPA4Q9UI42 421 aa15.28■□□□□ 0.04
LIG3-205ENST00000585941 NOCTQ9UK39 431 aaKnown RBP15.28■□□□□ 0.04
LIG3-205ENST00000585941 ZHX1Q9UKY1 873 aaPredicted RBP15.28■□□□□ 0.04
LIG3-205ENST00000585941 RRN3P2A6NIE6 340 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 IGF2BP3O00425 579 aaKnown RBP eCLIP15.27■□□□□ 0.03
LIG3-205ENST00000585941 FAM189A1O60320 539 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 MMP3P08254 477 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 HADHBP55084 474 aaKnown RBP15.27■□□□□ 0.03
LIG3-205ENST00000585941 TNFAIP2Q03169 654 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 MBTD1Q05BQ5 628 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 KYAT1Q16773 422 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 TDRD10Q5VZ19 366 aaKnown RBP15.27■□□□□ 0.03
LIG3-205ENST00000585941 SLFN11Q7Z7L1 901 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 ZNF677Q86XU0 584 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 CREG2Q8IUH2 290 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 RPUSD2Q8IZ73 545 aaKnown RBP15.27■□□□□ 0.03
LIG3-205ENST00000585941 LRRC57Q8N9N7 239 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 TAF4BQ92750 862 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 KAT5Q92993 513 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 CAPZA3Q96KX2 299 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 PARD6BQ9BYG5 372 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 IMPG2Q9BZV3 1241 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 PTPRHQ9HD43 1115 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 TNFSF13BQ9Y275 285 aa15.27■□□□□ 0.03
LIG3-205ENST00000585941 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.26■□□□□ 0.03
LIG3-205ENST00000585941 CCDC151A5D8V7 595 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 ABLIM1O14639 778 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 CYP26A1O43174 497 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 ZEB2O60315 1214 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 PHACTR2O75167 634 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 SGPL1O95470 568 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 IGBP1P78318 339 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 CDC42EP1Q00587 391 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 CDR2Q01850 454 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 PPFIA1Q13136 1202 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 TMEM132AQ24JP5 1023 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 CFAP221Q4G0U5 840 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 NFRKBQ6P4R8 1299 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 MTHFD1LQ6UB35 978 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 TMCO3Q6UWJ1 677 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 SAPCD2Q86UD0 394 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 TATDN2Q93075 761 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 CPSF3Q9UKF6 684 aaKnown RBP15.26■□□□□ 0.03
LIG3-205ENST00000585941 RAB21Q9UL25 225 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 DOCK3Q8IZD9 2030 aa15.26■□□□□ 0.03
LIG3-205ENST00000585941 IL18RAPO95256 599 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 SLC10A3P09131 477 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZNF286BP0CG31 522 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 HARSP12081 509 aaKnown RBP15.25■□□□□ 0.03
LIG3-205ENST00000585941 CYP11B1P15538 503 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZSCAN20P17040 1043 aaPredicted RBP15.25■□□□□ 0.03
LIG3-205ENST00000585941 CLCN6P51797 869 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 RPS6KA1Q15418 735 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 DUOXA2Q1HG44 320 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZNF568Q3ZCX4 644 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZBTB41Q5SVQ8 909 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 OLFML2BQ68BL8 750 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 C17orf99Q6UX52 265 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZBTB33Q86T24 672 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 NOP9Q86U38 636 aaKnown RBP15.25■□□□□ 0.03
LIG3-205ENST00000585941 IFNL1Q8IU54 200 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 SLC20A1Q8WUM9 679 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 SOCS4Q8WXH5 440 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 PBKQ96KB5 322 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZFYVE28Q9HCC9 887 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 PCDHB2Q9Y5E7 798 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 TARSL2A2RTX5 802 aaKnown RBP15.25■□□□□ 0.03
LIG3-205ENST00000585941 A6NJR5 290 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZNF185O15231 689 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ATP8B1O43520 1251 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ERLIN1O75477 346 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 VNN1O95497 513 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 FTCDO95954 541 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 TFRCP02786 760 aaKnown RBP15.25■□□□□ 0.03
LIG3-205ENST00000585941 FTLP02792 175 aaPredicted RBP15.25■□□□□ 0.03
LIG3-205ENST00000585941 KRT5P13647 590 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 CHRNB2P17787 502 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 GPC5P78333 572 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 SREBF2Q12772 1141 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 NCOA4Q13772 614 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 GRIK4Q16099 956 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 ZNF410Q86VK4 478 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 SLC47A2Q86VL8 602 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 MMGT1Q8N4V1 131 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 SLC35G2Q8TBE7 412 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 COG1Q8WTW3 980 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 RUBCNQ92622 972 aa15.25■□□□□ 0.03
LIG3-205ENST00000585941 CCDC102AQ96A19 550 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms