RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 C2orf69Q8N8R5 385 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 TESK2Q96S53 571 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SAMD15Q9P1V8 674 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 TRHDEQ9UKU6 1024 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 TNPO3Q9Y5L0 923 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SLC4A7Q9Y6M7 1214 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 ITGB4P16144 1822 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 ULK1O75385 1050 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 CTSKP43235 329 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 HERVK_113P62684 666 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 GPR19Q15760 415 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 IFIT1BQ5T764 474 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 BTBD8Q5XKL5 378 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SGMS1Q86VZ5 419 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SKAP1Q86WV1 359 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 ZNF227Q86WZ6 799 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 AMER2Q8N7J2 671 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SH3RF3Q8TEJ3 882 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 JPH3Q8WXH2 748 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 CCT6BQ92526 530 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 YTHDC1Q96MU7 727 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 P2RX7Q99572 595 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 UBA5Q9GZZ9 404 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 VPS33BQ9H267 617 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 INTS7Q9NVH2 962 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SAE1Q9UBE0 346 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 DSEQ9UL01 958 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 GOLGA8AA7E2F4 631 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 CFBP00751 764 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 HLA-DOAP06340 250 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 FGFR1P11362 822 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 BIRC3Q13489 604 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 PTPAQ15257 358 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 PDCD2Q16342 344 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 DEFB115Q30KQ5 88 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 MINDY4Q4G0A6 757 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 PAN2Q504Q3 1202 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 NECAB2Q7Z6G3 386 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 SMAP1Q8IYB5 467 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 TMEM52Q8NDY8 209 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 RAPGEF4Q8WZA2 1011 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 AHCYL2Q96HN2 611 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 C8orf49Q96NF6 230 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 TCF7L1Q9HCS4 588 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 TMEFF2Q9UIK5 374 aaPredicted RBP2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 INTUQ9ULD6 942 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 NR2E1Q9Y466 385 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 CEP83Q9Y592 693 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 PCDHA9Q9Y5H5 950 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 PCDHA2Q9Y5H9 948 aa2.29□□□□□ -2.04
SMCHD1-211ENST00000584897 A0A0G2JLL6 359 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 H7C1D1 291 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 TCERG1O14776 1098 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 ZEB2O60315 1214 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 PF4V1P10720 104 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 IL2RBP14784 551 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 COMTP21964 271 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 GRK2P25098 689 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CD38P28907 300 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CRHR2Q13324 411 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 FOXE3Q13461 319 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 PIN1Q13526 163 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 ABCB5Q2M3G0 1257 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 PKN3Q6P5Z2 889 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 COL23A1Q86Y22 540 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 MYLK4Q86YV6 388 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 MIER2Q8N344 545 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CBARPQ8N350 705 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CAMKK1Q8N5S9 505 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CNTD1Q8N815 330 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 RSAD2Q8WXG1 361 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 PTPRN2Q92932 1015 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 GCDHQ92947 438 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CCDC8Q9H0W5 538 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 ACSS2Q9NR19 701 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 ARHGEF4Q9NR80 690 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 AFDNP55196 1824 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 FRMPD2Q68DX3 1309 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 MYBBP1AQ9BQG0 1328 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 TRAF5O00463 557 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 EXOC5O00471 708 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 CBFA2T2O43439 604 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 AKAP10O43572 662 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 TADA3O75528 432 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 GCP02774 474 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 ATF2P15336 505 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 FAHP16930 419 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 ZNF28P17035 718 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 PTMSP20962 102 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 GNALP38405 381 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 SMAD4Q13485 552 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 UBE4AQ14139 1066 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 VMACQ2NL98 169 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 GRAMD1BQ3KR37 738 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 FAM109BQ6ICB4 259 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 PTF1AQ7RTS3 328 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 D2HGDHQ8N465 521 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 DAAM1Q9Y4D1 1078 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 A0A1W2PQU0 124 aa2.28□□□□□ -2.04
SMCHD1-211ENST00000584897 BLACEA4D250 179 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms