RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.39□□□□□ -0.59
SS18-217ENST00000580958 AIPL1Q9NZN9 384 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 HDAC6Q9UBN7 1215 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 DAAM1Q9Y4D1 1078 aa11.39□□□□□ -0.59
SS18-217ENST00000580958 PTPRJQ12913 1337 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 SSU72P8A0A1W2PR75 194 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 C17orf102A2RUQ5 167 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 TREHO43280 583 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 AKR1B10O60218 316 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 GFPT2O94808 682 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 PNMA6AP0CW24 399 aaPredicted RBP11.38□□□□□ -0.59
SS18-217ENST00000580958 FERP16591 822 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 TNNI1P19237 187 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 STAT1P42224 750 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 ARHGAP25P42331 645 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 EMP3P54852 163 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 ADAM17P78536 824 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 KLHL30Q0D2K2 578 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 DRAP1Q14919 205 aaPredicted RBP11.38□□□□□ -0.59
SS18-217ENST00000580958 KIZQ2M2Z5 673 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 GNASQ5JWF2 1037 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 SV2AQ7L0J3 742 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 IRF2BP2Q7Z5L9 587 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 SRGAP1Q7Z6B7 1085 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 KIAA1328Q86T90 577 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 TAS1R2Q8TE23 839 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 ZNF592Q92610 1267 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 CPB2Q96IY4 423 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 PRIMPOLQ96LW4 560 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 STK33Q9BYT3 514 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 ADAMTS10Q9H324 1103 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 PDZD7Q9H5P4 517 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 UBE2TQ9NPD8 197 aaPredicted RBP11.38□□□□□ -0.59
SS18-217ENST00000580958 LZTFL1Q9NQ48 299 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 TNFSF13BQ9Y275 285 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 COQ4Q9Y3A0 265 aa11.38□□□□□ -0.59
SS18-217ENST00000580958 R3HCC1Q9Y3T6 440 aaKnown RBP11.38□□□□□ -0.59
SS18-217ENST00000580958 F8VZ95 297 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 ZNF263O14978 683 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 TSPAN1O60635 241 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 FKTNO75072 461 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 ADAMTS4O75173 837 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 IPO7O95373 1038 aaKnown RBP11.37□□□□□ -0.59
SS18-217ENST00000580958 HLA-DRAP01903 254 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 C4BPAP04003 597 aaKnown RBP11.37□□□□□ -0.59
SS18-217ENST00000580958 HMGCRP04035 888 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 ARF4P18085 180 aaPredicted RBP11.37□□□□□ -0.59
SS18-217ENST00000580958 FGFR4P22455 802 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 RFX1P22670 979 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 SOX5P35711 763 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 PRKCIP41743 596 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 NKX3-2P78367 333 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 CLDN10P78369 228 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 KRT83P78385 493 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 CYP27A1Q02318 531 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 SPA17Q15506 151 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 ASTE1Q2TB18 679 aaPredicted RBP11.37□□□□□ -0.59
SS18-217ENST00000580958 ARHGAP29Q52LW3 1261 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 CXCL17Q6UXB2 119 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 SYT10Q6XYQ8 523 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 C15orf39Q6ZRI6 1047 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 C7orf31Q8N865 590 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 FBXL13Q8NEE6 735 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 RAET1EQ8TD07 263 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 DNAJB3Q8WWF6 145 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 ERO1AQ96HE7 468 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 NT5C1BQ96P26 610 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 GCOM2Q9BZD3 368 aaPredicted RBP11.37□□□□□ -0.59
SS18-217ENST00000580958 GPR88Q9GZN0 384 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 HAUS4Q9H6D7 363 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 CDHR5Q9HBB8 845 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 XPNPEP3Q9NQH7 507 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 RAB20Q9NX57 234 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 CPSF3Q9UKF6 684 aaKnown RBP11.37□□□□□ -0.59
SS18-217ENST00000580958 TFR2Q9UP52 801 aa11.37□□□□□ -0.59
SS18-217ENST00000580958 EVI5O60447 810 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 GPR32O75388 356 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 ERLIN2O94905 339 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 LCA5LO95447 670 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 ABL1P00519 1130 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 TUBB4AP04350 444 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 MCF2P10911 925 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 GNAT1P11488 350 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 HOXC8P31273 242 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 PIK3CAP42336 1068 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 MAGEA1P43355 309 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 OSTNP61366 133 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 ETF1P62495 437 aaKnown RBP11.36□□□□□ -0.59
SS18-217ENST00000580958 CDC42EP1Q00587 391 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 BIRC3Q13489 604 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 SURF1Q15526 300 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 NBPF20Q3BBV1 942 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 ZACNQ401N2 412 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 TDRD10Q5VZ19 366 aaKnown RBP11.36□□□□□ -0.59
SS18-217ENST00000580958 ZNF571Q7Z3V5 609 aaPredicted RBP11.36□□□□□ -0.59
SS18-217ENST00000580958 CEP120Q8N960 986 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 OR5B17Q8NGF7 314 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 KAT5Q92993 513 aa11.36□□□□□ -0.59
SS18-217ENST00000580958 TATDN2Q93075 761 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms