RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 SETD4Q9NVD3 440 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ADAM22Q9P0K1 906 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 MID2Q9UJV3 735 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 SLIT2O94813 1529 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 RFX7Q2KHR2 1363 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ZMYM2Q9UBW7 1377 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ITIH6Q6UXX5 1313 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GOLGA8QA0A0J9YX86 632 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 CCDC151A5D8V7 595 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GOLGA8OA6NCC3 632 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 KCNJ18B7U540 433 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GOLGA8NF8WBI6 632 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ADCY6O43306 1168 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GLUD1P00367 558 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ASS1P00966 412 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PDGFRBP09619 1106 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 OCM2P0CE71 109 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 OCMP0CE72 109 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM200BP0CF97 657 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PAX3P23760 479 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 HOXA10P31260 410 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 NPY2RP49146 381 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 RCAN1P53805 252 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 NLRP12P59046 1061 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PPP4CP60510 307 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 STX1BP61266 288 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 DMWDQ09019 674 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 AP1B1Q10567 949 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 TWF1Q12792 350 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PRKAA1Q13131 559 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 MORC3Q14149 939 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 KCNJ12Q14500 433 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PLCL1Q15111 1095 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 TYW1BQ6NUM6 668 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF746Q6NUN9 644 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 C16orf86Q6ZW13 317 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GPR142Q7Z601 462 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 TAB3Q8N5C8 712 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GPATCH11Q8N954 259 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 SLC7A14Q8TBB6 771 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 BAG1Q99933 345 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ZWILCHQ9H900 591 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 SARS2Q9NP81 518 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 CREBZFQ9NS37 354 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GGT7Q9UJ14 662 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 USP18Q9UMW8 372 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 TMX2Q9Y320 296 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 JRKLQ9Y4A0 524 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PCDHB5Q9Y5E4 795 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 MST1RQ04912 1400 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 F5H5T6 163 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 MAGEC1O60732 1142 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 SRGAP2O75044 1071 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 CYP21A2P08686 494 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ERVK-10P10266 1014 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 LCP1P13796 627 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 FOSL2P15408 326 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GNSP15586 552 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GNL1P36915 607 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 VPS41P49754 854 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GEMIN4P57678 1058 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ACTR2P61160 394 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 BEX3Q00994 111 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 DDR1Q08345 913 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 NAA30Q147X3 362 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 UBXN2BQ14CS0 331 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ELF2Q15723 593 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GRIK4Q16099 956 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 KRT39Q6A163 491 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 NXNQ6DKJ4 435 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 C8orf74Q6P047 294 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 NFRKBQ6P4R8 1299 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 FBXO46Q6PJ61 603 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PHLDB2Q86SQ0 1253 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 MFN1Q8IWA4 741 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 SRRM1Q8IYB3 904 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 PHACTR4Q8IZ21 702 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ANKS4BQ8N8V4 417 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 USP38Q8NB14 1042 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 OR8K1Q8NGG5 319 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 WDR48Q8TAF3 677 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ACER1Q8TDN7 264 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 DNAJB3Q8WWF6 145 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 SMG7Q92540 1137 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 MAP4K1Q92918 833 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 BHMTQ93088 406 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 L3MBTL3Q96JM7 780 aaPredicted RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GSDMAQ96QA5 445 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 CAMKK2Q96RR4 588 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 GPR20Q99678 358 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ADAM2Q99965 735 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 OMDQ99983 421 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 EIF2AK1Q9BQI3 630 aaKnown RBP3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.11□□□□□ -1.911e-6■■■□□ 17.6
SMCHD1-203ENST00000577880 DCLK3Q9C098 648 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM107BQ9H098 131 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 RSAD1Q9HA92 442 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 ANKEF1Q9NU02 776 aa3.11□□□□□ -1.91
SMCHD1-203ENST00000577880 FBXO28Q9NVF7 368 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms