RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ASTLQ6HA08 431 aaPredicted RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 MIS18BP1Q6P0N0 1132 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 ABHD15Q6UXT9 468 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 OTUD6AQ7L8S5 288 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 CCDC186Q7Z3E2 898 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 TMC6Q7Z403 805 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 FILIP1Q7Z7B0 1213 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 CREBRFQ8IUR6 639 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 CCDC60Q8IWA6 550 aaPredicted RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 CCDC150Q8NCX0 1101 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 PIGOQ8TEQ8 1089 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 NKD2Q969F2 451 aaPredicted RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 DNAJC19Q96DA6 116 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 ADAM7Q9H2U9 754 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 ELAC1Q9H777 363 aaKnown RBP11.12□□□□□ -0.63
SS18-207ENST00000577636 ODF2LQ9ULJ1 636 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 AKT3Q9Y243 479 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 PCDHA10Q9Y5I2 948 aa11.12□□□□□ -0.63
SS18-207ENST00000577636 PTPRZ1P23471 2315 aaPredicted RBP11.11□□□□□ -0.63
SS18-207ENST00000577636 C2orf71A6NGG8 1288 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 SPDYE4A6NLX3 237 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 KCNJ18B7U540 433 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 PROB1E7EW31 1015 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 STK25O00506 426 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 HOXA2O43364 376 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 GPR32O75388 356 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 LYPLA2O95372 231 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 ATP4AP20648 1035 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 FGFR4P22455 802 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 MTHFRP42898 656 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 ID4P47928 161 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 CLCN3P51790 818 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 NLRP11P59045 1033 aaKnown RBP11.11□□□□□ -0.63
SS18-207ENST00000577636 ITIH3Q06033 890 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 RAD51AP2Q09MP3 1159 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 GIT2Q14161 759 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 KCNJ12Q14500 433 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 DSC3Q14574 896 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 BMS1Q14692 1282 aaKnown RBP11.11□□□□□ -0.63
SS18-207ENST00000577636 ATAT1Q5SQI0 421 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 FOXR2Q6PJQ5 311 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 B3GNT9Q6UX72 402 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 ECHDC2Q86YB7 292 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 LRRC43Q8N309 656 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 MRPL43Q8N983 215 aaKnown RBP11.11□□□□□ -0.63
SS18-207ENST00000577636 TDRD5Q8NAT2 981 aaKnown RBP11.11□□□□□ -0.63
SS18-207ENST00000577636 AUTS2Q8WXX7 1259 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 SCLT1Q96NL6 688 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 NECTIN4Q96NY8 510 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 REEP2Q9BRK0 252 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 TIPINQ9BVW5 301 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 RNF19AQ9NV58 838 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 SEL1LQ9UBV2 794 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 LIMA1Q9UHB6 759 aaKnown RBP11.11□□□□□ -0.63
SS18-207ENST00000577636 LOXHD1Q8IVV2 1947 aa11.11□□□□□ -0.63
SS18-207ENST00000577636 KMT2EQ8IZD2 1858 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 IGKV6D-21A0A0A0MT36 114 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 N4BP3O15049 544 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 SFPQP23246 707 aaKnown RBP eCLIP11.1□□□□□ -0.63
SS18-207ENST00000577636 PPM1AP35813 382 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 NBL1P41271 181 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 ALDH7A1P49419 539 aaKnown RBP11.1□□□□□ -0.63
SS18-207ENST00000577636 TCP11X2Q5H9J9 407 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 SPECC1LQ69YQ0 1117 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 RINT1Q6NUQ1 792 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 PPFIBP1Q86W92 1011 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 VSTM4Q8IW00 320 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 C4orf19Q8IY42 314 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 SLC39A11Q8N1S5 342 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 LRRC71Q8N4P6 559 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 MYCT1Q8N699 235 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 KIAA0895Q8NCT3 520 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 HELQQ8TDG4 1101 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 SRRTQ9BXP5 876 aaKnown RBP11.1□□□□□ -0.63
SS18-207ENST00000577636 HSD3B7Q9H2F3 369 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 MRPL44Q9H9J2 332 aaKnown RBP11.1□□□□□ -0.63
SS18-207ENST00000577636 PARVGQ9HBI0 331 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 ANKEF1Q9NU02 776 aa11.1□□□□□ -0.63
SS18-207ENST00000577636 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.1□□□□□ -0.634e-6■■■□□ 17.6
SS18-207ENST00000577636 COL1A2P08123 1366 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 NPHP3-ACAD11A0A0J9YXS1 232 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 A0A1B0GTH6 734 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 FRMD3A2A2Y4 597 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 ZBTB42B2RXF5 422 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 PES1O00541 588 aaKnown RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 PI15O43692 258 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 C22orf31O95567 290 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 GNA14O95837 355 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 EPCAMP16422 314 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 GUCY2CP25092 1073 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 TMOD1P28289 359 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 YWHABP31946 246 aaKnown RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 MTIF2P46199 727 aaKnown RBP11.09□□□□□ -0.63
SS18-207ENST00000577636 BCAR1P56945 870 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 EHHADHQ08426 723 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 ALCAMQ13740 583 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 ARSHQ5FYA8 562 aa11.09□□□□□ -0.63
SS18-207ENST00000577636 CLLU1OSQ5K130 101 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms