RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 RNF168Q8IYW5 571 aaPredicted RBP16.99■□□□□ 0.31
SF3B3-215ENST00000577085 TMEM161BQ8NDZ6 487 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 RAD54LQ92698 747 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 UROC1Q96N76 676 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 ACAP3Q96P50 834 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 REEP2Q9BRK0 252 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 PAAF1Q9BRP4 392 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 ZSCAN16Q9H4T2 348 aaPredicted RBP16.99■□□□□ 0.31
SF3B3-215ENST00000577085 POMKQ9H5K3 350 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 MAN1C1Q9NR34 630 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 CHST7Q9NS84 486 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 SLC38A7Q9NVC3 462 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 CDH22Q9UJ99 828 aa16.99■□□□□ 0.31
SF3B3-215ENST00000577085 K7ENM7 598 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 CLDN3O15551 220 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 TRAPPC3O43617 180 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 STX6O43752 255 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 B3GAT3O94766 335 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 MAPTP10636 758 aaKnown RBP16.98■□□□□ 0.31
SF3B3-215ENST00000577085 SCP2P22307 547 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 GRIN1Q05586 938 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 RESTQ13127 1097 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 MCM6Q14566 821 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 NOLC1Q14978 699 aaKnown RBP eCLIP16.98■□□□□ 0.312e-12■□□□□ 10
SF3B3-215ENST00000577085 KANK3Q6NY19 840 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 PDXDC1Q6P996 788 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 TAS1R3Q7RTX0 852 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 PALB2Q86YC2 1186 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 GLYCTKQ8IVS8 523 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 KRI1Q8N9T8 703 aaKnown RBP16.98■□□□□ 0.31
SF3B3-215ENST00000577085 TDRD5Q8NAT2 981 aaKnown RBP16.98■□□□□ 0.31
SF3B3-215ENST00000577085 LARP4BQ92615 738 aaKnown RBP16.98■□□□□ 0.31
SF3B3-215ENST00000577085 TTPALQ9BTX7 342 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 CCSER1Q9C0I3 900 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 PARVGQ9HBI0 331 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 RXFP1Q9HBX9 757 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 PTPRHQ9HD43 1115 aa16.98■□□□□ 0.31
SF3B3-215ENST00000577085 SMIM28A0A1B0GU29 152 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 EFEMP2O95967 443 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 MYBP10242 640 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 ABCD1P33897 745 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 LIG4P49917 911 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 ARSHQ5FYA8 562 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 SPECC1Q5M775 1068 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 FAM173BQ6P4H8 233 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 ZPBP2Q6X784 338 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 HAUS6Q7Z4H7 955 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 GPR65Q8IYL9 337 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 CEP120Q8N960 986 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 EDAQ92838 391 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 PPP1R10Q96QC0 940 aaKnown RBP16.97■□□□□ 0.31
SF3B3-215ENST00000577085 CXCL16Q9H2A7 254 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 C11orf16Q9NQ32 467 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 FNIP2Q9P278 1114 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 GTF3C3Q9Y5Q9 886 aa16.97■□□□□ 0.31
SF3B3-215ENST00000577085 HNRNPDLO14979 420 aaKnown RBP16.96■□□□□ 0.31
SF3B3-215ENST00000577085 TRAK2O60296 914 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 SPATA31D3P0C874 917 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 DDIT3P35638 169 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 CLCNKBP51801 687 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 NCKAP1LP55160 1127 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 PSMD5Q16401 504 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 RTP2Q5QGT7 225 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 RRAGBQ5VZM2 374 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 DCLRE1AQ6PJP8 1040 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 PRSS55Q6UWB4 352 aaPredicted RBP16.96■□□□□ 0.31
SF3B3-215ENST00000577085 C15orf39Q6ZRI6 1047 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 SPATA31D4Q6ZUB0 917 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 CCDC149Q6ZUS6 474 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 GPR149Q86SP6 731 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 SNX21Q969T3 373 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 ACSF2Q96CM8 615 aaPredicted RBP16.96■□□□□ 0.31
SF3B3-215ENST00000577085 DDX27Q96GQ7 796 aaKnown RBP16.96■□□□□ 0.31
SF3B3-215ENST00000577085 EPSTI1Q96J88 318 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 PLEKHA4Q9H4M7 779 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 PIDD1Q9HB75 910 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 BLOC1S4Q9NUP1 217 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 FBXO2Q9UK22 296 aaPredicted RBP16.96■□□□□ 0.31
SF3B3-215ENST00000577085 MTMR6Q9Y217 621 aa16.96■□□□□ 0.31
SF3B3-215ENST00000577085 SRPRBQ9Y5M8 271 aaKnown RBP16.96■□□□□ 0.31
SF3B3-215ENST00000577085 CCDC195A0A1B0GUA6 201 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 TGM5O43548 720 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 BRD1O95696 1058 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 RPL17P18621 184 aaKnown RBP16.95■□□□□ 0.3
SF3B3-215ENST00000577085 PROZP22891 400 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 PTPAQ15257 358 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 NAB2Q15742 525 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.95■□□□□ 0.3
SF3B3-215ENST00000577085 PLCD3Q8N3E9 789 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 HDAC7Q8WUI4 952 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 ZBTB45Q96K62 511 aaPredicted RBP16.95■□□□□ 0.3
SF3B3-215ENST00000577085 SNX27Q96L92 541 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 STK17AQ9UEE5 414 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 RAPGEFL1Q9UHV5 662 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 TBX20Q9UMR3 447 aa16.95■□□□□ 0.3
SF3B3-215ENST00000577085 C2CD4DB7Z1M9 353 aa16.94■□□□□ 0.3
SF3B3-215ENST00000577085 TMEM189-UBE2V1I3L0A0 370 aa16.94■□□□□ 0.3
SF3B3-215ENST00000577085 C1RP00736 705 aa16.94■□□□□ 0.3
SF3B3-215ENST00000577085 ZXDAP98168 799 aa16.94■□□□□ 0.3
SF3B3-215ENST00000577085 STK38Q15208 465 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms