RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TMEM117Q9H0C3 514 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 GIT1Q9Y2X7 761 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 IPPQ9Y573 584 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.49■■□□□ 1.19
VPS53-210ENST00000571456 STYXL1Q9Y6J8 313 aa22.49■■□□□ 1.19
VPS53-210ENST00000571456 FNDC1Q4ZHG4 1894 aaPredicted RBP22.48■■□□□ 1.19
VPS53-210ENST00000571456 UPP2O95045 317 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 NPTXRO95502 500 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 EDN1P05305 212 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 MYBP10242 640 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 ITGA4P13612 1032 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 CTC1Q2NKJ3 1217 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 COBLL1Q53SF7 1204 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 GLB1LQ6UWU2 654 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 FBXL6Q8N531 539 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 TRIML1Q8N9V2 468 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 ZNF689Q96CS4 500 aaPredicted RBP22.48■■□□□ 1.19
VPS53-210ENST00000571456 GBP3Q9H0R5 595 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 IRF2BPLQ9H1B7 796 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 KANSL3Q9P2N6 904 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 PCDHA5Q9Y5H7 936 aa22.48■■□□□ 1.19
VPS53-210ENST00000571456 CITO14578 2027 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 INPPL1O15357 1258 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 ATF7P17544 494 aaPredicted RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 GARTP22102 1010 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 GRM5P41594 1212 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 CASP5P51878 434 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 STK4Q13043 487 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 ZNF658Q5TYW1 1059 aaPredicted RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 HS2ST1Q7LGA3 356 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 TMEM192Q8IY95 271 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 SMG8Q8ND04 991 aaKnown RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 CCDC94Q9BW85 323 aaPredicted RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 EIF2AQ9BY44 585 aaKnown RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 NUP62CLQ9H1M0 184 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 CDT1Q9H211 546 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 CLSTN2Q9H4D0 955 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 RC3H2Q9HBD1 1191 aaKnown RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 SLC39A2Q9NP94 309 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 TOPORSQ9NS56 1045 aaPredicted RBP22.47■■□□□ 1.19
VPS53-210ENST00000571456 RWDD3Q9Y3V2 267 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 PLXNA3P51805 1871 aa22.47■■□□□ 1.19
VPS53-210ENST00000571456 TTLL13PA6NNM8 815 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 ABLIM1O14639 778 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 LDHAP00338 332 aaKnown RBP22.46■■□□□ 1.19
VPS53-210ENST00000571456 MATR3P43243 847 aaKnown RBP eCLIP22.46■■□□□ 1.19
VPS53-210ENST00000571456 SMAD4Q13485 552 aaKnown RBP22.46■■□□□ 1.19
VPS53-210ENST00000571456 EEF1DP3Q658K8 133 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 GUF1Q8N442 669 aaKnown RBP22.46■■□□□ 1.19
VPS53-210ENST00000571456 SCFD1Q8WVM8 642 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 RSAD1Q9HA92 442 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 ALG13Q9NP73 1137 aaKnown RBP22.46■■□□□ 1.19
VPS53-210ENST00000571456 ANKFY1Q9P2R3 1169 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 VPS13AQ96RL7 3174 aa22.46■■□□□ 1.19
VPS53-210ENST00000571456 WDR87Q6ZQQ6 2873 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 CACNA1BQ00975 2339 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 A0A0B4J269 797 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 OGTO15294 1046 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 PRPF6O94906 941 aaKnown RBP22.45■■□□□ 1.18
VPS53-210ENST00000571456 YARSP54577 528 aaKnown RBP22.45■■□□□ 1.18
VPS53-210ENST00000571456 DLX2Q07687 328 aaPredicted RBP22.45■■□□□ 1.18
VPS53-210ENST00000571456 KNOP1Q1ED39 458 aaKnown RBP22.45■■□□□ 1.18
VPS53-210ENST00000571456 KIAA0895Q8NCT3 520 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 URGCPQ8TCY9 931 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 TMEM174Q8WUU8 243 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 ATOH1Q92858 354 aaPredicted RBP22.45■■□□□ 1.18
VPS53-210ENST00000571456 TSPAN18Q96SJ8 248 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 KIAA1468Q9P260 1216 aa22.45■■□□□ 1.18
VPS53-210ENST00000571456 RBAK-RBAKDNI3L0D1 243 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 STIM1Q13586 685 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 BTG3Q14201 252 aaPredicted RBP22.44■■□□□ 1.18
VPS53-210ENST00000571456 AGMOQ6ZNB7 445 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 CDR2LQ86X02 465 aaPredicted RBP22.44■■□□□ 1.18
VPS53-210ENST00000571456 C12orf56Q8IXR9 622 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 LRRC43Q8N309 656 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 RNF169Q8NCN4 708 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 HPS3Q969F9 1004 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 ACAP3Q96P50 834 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 MSTO1Q9BUK6 570 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 NXF3Q9H4D5 531 aaKnown RBP22.44■■□□□ 1.18
VPS53-210ENST00000571456 KIAA1586Q9HCI6 787 aa22.44■■□□□ 1.18
VPS53-210ENST00000571456 PDXKO00764 312 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 CLTAP09496 248 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 ZXDAP98168 799 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 HYAL1Q12794 435 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 MYBPC2Q14324 1141 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 ERMP1Q7Z2K6 904 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 CD302Q8IX05 232 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 FIBCD1Q8N539 461 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 POMGNT1Q8WZA1 660 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 SYAP1Q96A49 352 aaPredicted RBP22.43■■□□□ 1.18
VPS53-210ENST00000571456 FGFBP2Q9BYJ0 223 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 PLEKHA5Q9HAU0 1116 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 TYW1Q9NV66 732 aaKnown RBP22.43■■□□□ 1.18
VPS53-210ENST00000571456 AGO2Q9UKV8 859 aaKnown RBP22.43■■□□□ 1.18
VPS53-210ENST00000571456 GVINP1Q7Z2Y8 2422 aa22.43■■□□□ 1.18
VPS53-210ENST00000571456 TDRD15B5MCY1 1934 aaKnown RBP22.43■■□□□ 1.18
VPS53-210ENST00000571456 OFD1O75665 1012 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 KCNA1Q09470 495 aa22.42■■□□□ 1.18
VPS53-210ENST00000571456 NOMO2Q5JPE7 1267 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms