RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GSTCDQ8NEC7 633 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 RUFY2Q8WXA3 655 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 KIF12Q96FN5 646 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 SCNM1Q9BWG6 230 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 TEKT3Q9BXF9 490 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 UNC45AQ9H3U1 944 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 RBM28Q9NW13 759 aaKnown RBP20.17■□□□□ 0.82
CLK3-227ENST00000570296 HES2Q9Y543 173 aa20.17■□□□□ 0.82
CLK3-227ENST00000570296 V9GY48 417 aaPredicted RBP20.17■□□□□ 0.82
CLK3-227ENST00000570296 MSH4O15457 936 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 ADAM12O43184 909 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 ERLIN2O94905 339 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 CCNE1P24864 410 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 GDI1P31150 447 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 MPLP40238 635 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 RBM25P49756 843 aaKnown RBP20.16■□□□□ 0.82
CLK3-227ENST00000570296 FUT2Q10981 343 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 FAM78AQ5JUQ0 283 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 FAM171A1Q5VUB5 890 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 NOTUMQ6P988 496 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 SGMS1Q86VZ5 419 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 CHD1LQ86WJ1 897 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 EXOC6Q8TAG9 804 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 DEPDC1BQ8WUY9 529 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 SLC5A5Q92911 643 aa20.16■□□□□ 0.82
CLK3-227ENST00000570296 ADAMTS20P59510 1910 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 FREM2Q5SZK8 3169 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 DDX11L8A8MPP1 907 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 RPP40O75818 363 aaKnown RBP20.15■□□□□ 0.82
CLK3-227ENST00000570296 MICAL2O94851 1124 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 SRGAP2CP0DJJ0 459 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 DGKKQ5KSL6 1271 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 LRCH2Q5VUJ6 765 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 DAB2IPQ5VWQ8 1189 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 MIER3Q7Z3K6 550 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 CEP57Q86XR8 500 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 EXOC8Q8IYI6 725 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 REXO1Q8N1G1 1221 aaKnown RBP20.15■□□□□ 0.82
CLK3-227ENST00000570296 PRPF31Q8WWY3 499 aaKnown RBP20.15■□□□□ 0.82
CLK3-227ENST00000570296 PSPC1Q8WXF1 523 aaKnown RBP20.15■□□□□ 0.82
CLK3-227ENST00000570296 SLC7A3Q8WY07 619 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 RABGGTAQ92696 567 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 ASB16Q96NS5 453 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 CSRNP2Q9H175 543 aa20.15■□□□□ 0.82
CLK3-227ENST00000570296 CCDC163A0A0D9SF12 145 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 ESYT2A0FGR8 921 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 PTPN2P17706 415 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 LAMTOR4Q0VGL1 99 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 ELAVL2Q12926 359 aaKnown RBP20.14■□□□□ 0.81
CLK3-227ENST00000570296 SH3PXD2AQ5TCZ1 1133 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 VITQ6UXI7 678 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 SYNE3Q6ZMZ3 975 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 Q6ZS52 159 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 ANO5Q75V66 913 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 KBTBD6Q86V97 674 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 SMC5Q8IY18 1101 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 EDEM2Q9BV94 578 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 APOL6Q9BWW8 343 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 SMOC1Q9H4F8 434 aa20.14■□□□□ 0.81
CLK3-227ENST00000570296 RBM12Q9NTZ6 932 aaKnown RBP20.14■□□□□ 0.81
CLK3-227ENST00000570296 NAV2Q8IVL1 2488 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 ZNF263O14978 683 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 TSPAN1O60635 241 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 AKAP3O75969 853 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 TOP3BO95985 862 aaKnown RBP20.13■□□□□ 0.81
CLK3-227ENST00000570296 CEACAM1P13688 526 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 OR1D2P34982 312 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 NCBP1Q09161 790 aaKnown RBP20.13■□□□□ 0.81
CLK3-227ENST00000570296 SOWAHCQ53LP3 525 aaPredicted RBP20.13■□□□□ 0.81
CLK3-227ENST00000570296 PRSS36Q5K4E3 855 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 B4GALNT3Q6L9W6 998 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 SMARCD2Q92925 531 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 ZC3H10Q96K80 434 aaKnown RBP20.13■□□□□ 0.81
CLK3-227ENST00000570296 TRIM6Q9C030 488 aaPredicted RBP20.13■□□□□ 0.81
CLK3-227ENST00000570296 NXF3Q9H4D5 531 aaKnown RBP20.13■□□□□ 0.81
CLK3-227ENST00000570296 C2orf42Q9NWW7 574 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 NEUROG3Q9Y4Z2 214 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 BPTFQ12830 3046 aa20.13■□□□□ 0.81
CLK3-227ENST00000570296 EML5Q05BV3 1969 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 C4orf47A7E2U8 309 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 ARNTLO00327 626 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 ZNF197O14709 1029 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 CSRP1P21291 193 aaKnown RBP20.12■□□□□ 0.81
CLK3-227ENST00000570296 SPIRE1Q08AE8 756 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 TUSC3Q13454 348 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 SYNPOQ8N3V7 929 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 HASPINQ8TF76 798 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 PAAF1Q9BRP4 392 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 ZMYND12Q9H0C1 365 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 C8orf33Q9H7E9 229 aaPredicted RBP20.12■□□□□ 0.81
CLK3-227ENST00000570296 C6orf50Q9HD87 102 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 MTRRQ9UBK8 725 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 PPME1Q9Y570 386 aa20.12■□□□□ 0.81
CLK3-227ENST00000570296 ARHGEF37A1IGU5 675 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 WDR27A2RRH5 827 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 ASAP2O43150 1006 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 PSMD10O75832 226 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 KIF4AO95239 1232 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 CCDC192P0DO97 292 aa20.11■□□□□ 0.81
CLK3-227ENST00000570296 NUCB1Q02818 461 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms