RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 YARSP54577 528 aaKnown RBP14.27□□□□□ -0.13
CNOT1-220ENST00000569916 MCL1Q07820 350 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 HSP90AA2PQ14568 343 aaPredicted RBP14.27□□□□□ -0.13
CNOT1-220ENST00000569916 XKR4Q5GH76 650 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 FUT10Q6P4F1 479 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 SYCE2Q6PIF2 218 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 ALKAL1Q6UXT8 129 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 SV2BQ7L1I2 683 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 DYMQ7RTS9 669 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 PDILTQ8N807 584 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 DDX12PQ92771 950 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 DNAJC19Q96DA6 116 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 SNX27Q96L92 541 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 TCHPQ9BT92 498 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 PANK2Q9BZ23 570 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 GPR62Q9BZJ7 368 aa14.27□□□□□ -0.13
CNOT1-220ENST00000569916 TOPORSQ9NS56 1045 aaPredicted RBP14.27□□□□□ -0.13
CNOT1-220ENST00000569916 USP15Q9Y4E8 981 aaPredicted RBP14.27□□□□□ -0.13
CNOT1-220ENST00000569916 TCHHQ07283 1943 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 MTCL1Q9Y4B5 1905 aaKnown RBP14.26□□□□□ -0.13
CNOT1-220ENST00000569916 CNPP09543 421 aaKnown RBP14.26□□□□□ -0.13
CNOT1-220ENST00000569916 NMT1P30419 496 aaKnown RBP14.26□□□□□ -0.13
CNOT1-220ENST00000569916 GLUD2P49448 558 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 GTF2BQ00403 316 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 DSG1Q02413 1049 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 DNM1Q05193 864 aaKnown RBP14.26□□□□□ -0.13
CNOT1-220ENST00000569916 ZP2Q05996 745 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 E2F4Q16254 413 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 AXDND1Q5T1B0 1012 aaPredicted RBP14.26□□□□□ -0.13
CNOT1-220ENST00000569916 KIAA0319Q5VV43 1072 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 ATL3Q6DD88 541 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 SHC4Q6S5L8 630 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 SFR1Q86XK3 245 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 MAP4K3Q8IVH8 894 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 KCNG4Q8TDN1 519 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 HASPINQ8TF76 798 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 SLC22A17Q8WUG5 538 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 CASP10Q92851 521 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 BICD1Q96G01 975 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 KLHL5Q96PQ7 755 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 S1PR5Q9H228 398 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 ST6GALNAC4Q9H4F1 302 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 MRPL17Q9NRX2 175 aaKnown RBP14.26□□□□□ -0.13
CNOT1-220ENST00000569916 CHST7Q9NS84 486 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 PRKAG3Q9UGI9 489 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 ZDHHC9Q9Y397 364 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 C5orf42Q9H799 3197 aa14.26□□□□□ -0.13
CNOT1-220ENST00000569916 C2orf16Q68DN1 1984 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 NCOR1O75376 2440 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SF3B1O75533 1304 aaKnown RBP eCLIP14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SMIM28A0A1B0GU29 152 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 C2CD2LO14523 706 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 HNRNPDLO14979 420 aaKnown RBP14.25□□□□□ -0.13
CNOT1-220ENST00000569916 CLDN3O15551 220 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 EPCAMP16422 314 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 LIG4P49917 911 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SOX4Q06945 474 aaPredicted RBP14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SEZ6Q53EL9 994 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 ZC2HC1CQ53FD0 456 aaPredicted RBP14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SLC39A4Q6P5W5 647 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 ADHFE1Q8IWW8 467 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 GJD3Q8N144 294 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SUSD6Q92537 303 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 B3GALT6Q96L58 329 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 ZMAT2Q96NC0 199 aaKnown RBP14.25□□□□□ -0.13
CNOT1-220ENST00000569916 ACAP3Q96P50 834 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 EMILIN2Q9BXX0 1053 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 GOLGA2P5Q9HBQ8 144 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 CNTN3Q9P232 1028 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 SSX2IPQ9Y2D8 614 aa14.25□□□□□ -0.13
CNOT1-220ENST00000569916 FRMD3A2A2Y4 597 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 C19orf67A6NJJ6 358 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 TMEM189-UBE2V1I3L0A0 370 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 FAM189A1O60320 539 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 TADA2AO75478 443 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 PPP1R37O75864 691 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 KCNE1P15382 129 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 HOXB8P17481 243 aaPredicted RBP14.24□□□□□ -0.13
CNOT1-220ENST00000569916 ABCD1P33897 745 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 CLCN4P51793 760 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 CLCNKBP51801 687 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 SLC10A6Q3KNW5 377 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 USP41Q3LFD5 358 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 PPFIBP1Q86W92 1011 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 TMEM87AQ8NBN3 555 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 KHSRPQ92945 711 aaKnown RBP eCLIP14.24□□□□□ -0.133e-10■□□□□ 10.7
CNOT1-220ENST00000569916 APOL5Q9BWW9 433 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 TNMDQ9H2S6 317 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 RXFP1Q9HBX9 757 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 SEL1LQ9UBV2 794 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 CFAP45Q9UL16 551 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 PCDHA7Q9UN72 937 aa14.24□□□□□ -0.13
CNOT1-220ENST00000569916 TEX28O15482 410 aa14.23□□□□□ -0.13
CNOT1-220ENST00000569916 CXCL8P10145 99 aa14.23□□□□□ -0.13
CNOT1-220ENST00000569916 GAP43P17677 238 aa14.23□□□□□ -0.13
CNOT1-220ENST00000569916 IGFBP6P24592 240 aaPredicted RBP14.23□□□□□ -0.13
CNOT1-220ENST00000569916 KLRC2P26717 231 aa14.23□□□□□ -0.13
CNOT1-220ENST00000569916 SSTR3P32745 418 aaPredicted RBP14.23□□□□□ -0.13
CNOT1-220ENST00000569916 TNFSF9P41273 254 aa14.23□□□□□ -0.13
CNOT1-220ENST00000569916 MATR3P43243 847 aaKnown RBP eCLIP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms