RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 IL1R1P14778 569 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 MXI1P50539 228 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 COBLL1Q53SF7 1204 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 CRNKL1Q9BZJ0 848 aaKnown RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 ARMC7Q9H6L4 198 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 POLLQ9UGP5 575 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 KLRG2A4D1S0 409 aaPredicted RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 PPP1R3GB7ZBB8 358 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 PBX1P40424 430 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 POLR2FP61218 127 aaKnown RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 PTGDRQ13258 359 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 ASRGL1Q7L266 308 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 FAM186BQ8IYM0 893 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 MGARPQ8TDB4 240 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 ARHGEF2Q92974 986 aaKnown RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 MS4A14Q96JA4 679 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 KRT12Q99456 494 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 ASCC2Q9H1I8 757 aaPredicted RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 DCLRE1BQ9H816 532 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 PALMDQ9NP74 551 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 FGFR1OP2Q9NVK5 253 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 MCM9Q9NXL9 1143 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 HOXC10Q9NYD6 342 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 GOLGA8TH3BQL2 631 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 AP3B1O00203 1094 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 CAPN9O14815 690 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 GOLGA8HP0CJ92 632 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 ERCC5P28715 1186 aaPredicted RBP11.52□□□□□ -0.56
CLK3-226ENST00000569406 RCVRNP35243 200 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 NEK3P51956 506 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 ZNF174Q15697 407 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 ARL13BQ3SXY8 428 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 NAALADL2Q58DX5 795 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 RRAGBQ5VZM2 374 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 SPERTQ8NA61 448 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 ENOX1Q8TC92 643 aaKnown RBP11.52□□□□□ -0.56
CLK3-226ENST00000569406 SATB2Q9UPW6 733 aa11.52□□□□□ -0.56
CLK3-226ENST00000569406 TRIM75PA6NK02 468 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 PHBP35232 272 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 RGS2P41220 211 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 PRKCIP41743 596 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 EMP3P54852 163 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 CYP27A1Q02318 531 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 GALNTL6Q49A17 601 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 LLGL2Q6P1M3 1020 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 ZNF449Q6P9G9 518 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 B3GNT6Q6ZMB0 384 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 VPS50Q96JG6 964 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 IFT122Q9HBG6 1241 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 GOLGA8IPA6NC78 632 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 STAMBPO95630 424 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 CALM1P0DP23 149 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 CALM2P0DP24 149 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 CALM3P0DP25 149 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 CHKAP35790 457 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 KPNA1P52294 538 aaPredicted RBP11.52□□□□□ -0.57
CLK3-226ENST00000569406 HERVK_113P62684 666 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 TFAP4Q01664 338 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 CDKAL1Q5VV42 579 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 LRIG3Q6UXM1 1119 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 MREGQ8N565 214 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 SUN5Q8TC36 379 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 PTTG2Q9NZH5 202 aa11.52□□□□□ -0.57
CLK3-226ENST00000569406 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 ANO9A1A5B4 782 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 TFPTP0C1Z6 253 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 TARSP26639 723 aaKnown RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 EPHB2P29323 1055 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 KRT83P78385 493 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 GFPT1Q06210 699 aaPredicted RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 MYLK3Q32MK0 819 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 LRRC74BQ6ZQY2 392 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 DGKHQ86XP1 1220 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 CCDC125Q86Z20 511 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 BRSK2Q8IWQ3 736 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 KLHL7Q8IXQ5 586 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 OSCP1Q8WVF1 389 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 GPKOWQ92917 476 aaPredicted RBP eCLIP11.51□□□□□ -0.57
CLK3-226ENST00000569406 LRRC45Q96CN5 670 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 BLZF1Q9H2G9 400 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 BHMT2Q9H2M3 363 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 DENND2DQ9H6A0 471 aaPredicted RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 PPP1R9AQ9ULJ8 1098 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 NCK2O43639 380 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 CBFA2T3O75081 653 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 PGM3O95394 542 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 ENO2P09104 434 aaPredicted RBP11.51□□□□□ -0.57
CLK3-226ENST00000569406 GRM4Q14833 912 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 TRAPPC3LQ5T215 181 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 AGBL2Q5U5Z8 902 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 PRR23CQ6ZRP0 262 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 RFPL4BQ6ZWI9 263 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 C7orf57Q8NEG2 295 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 ANKRD36BP1Q96IX9 119 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 CD209Q9NNX6 404 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 HAO1Q9UJM8 370 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 SPATA31A6Q5VVP1 1343 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 FAM47E-STBD1D6RA91 191 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 UBAP1LF5GYI3 381 aa11.51□□□□□ -0.57
CLK3-226ENST00000569406 PABPC4LP0CB38 370 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms