RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SIX5Q8N196 739 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 SLC44A3Q8N4M1 653 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 IGSF22Q8N9C0 903 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 LNX1Q8TBB1 728 aaPredicted RBP18.55■□□□□ 0.56
CLN3-231ENST00000568422 UROC1Q96N76 676 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 MYADMQ96S97 322 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 CLSTN3Q9BQT9 956 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 CACNG4Q9UBN1 327 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 FBXW11Q9UKB1 542 aa18.55■□□□□ 0.56
CLN3-231ENST00000568422 MYO15AQ9UKN7 3530 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 TMEM189-UBE2V1I3L0A0 370 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 SRFP11831 508 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 NPR3P17342 541 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 HOXA9P31269 272 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 NBL1P41271 181 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 LIN9Q5TKA1 542 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 ATF7IP2Q5U623 682 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 EEF1DP3Q658K8 133 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.54■□□□□ 0.56
CLN3-231ENST00000568422 RTL10Q7L3V2 364 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 HASPINQ8TF76 798 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 DDX19AQ9NUU7 478 aaKnown RBP18.54■□□□□ 0.56
CLN3-231ENST00000568422 DNM3Q9UQ16 869 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 GDAQ9Y2T3 454 aa18.54■□□□□ 0.56
CLN3-231ENST00000568422 ANHXE9PGG2 379 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 EDN1P05305 212 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 PRPHP41219 470 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 PTGDRQ13258 359 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 NT5DC1Q5TFE4 455 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 KRT79Q5XKE5 535 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 DCLRE1AQ6PJP8 1040 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 SNX29Q8TEQ0 813 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 RSAD2Q8WXG1 361 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 PPP1R10Q96QC0 940 aaKnown RBP18.53■□□□□ 0.56
CLN3-231ENST00000568422 KIFC3Q9BVG8 833 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 TMEM134Q9H6X4 195 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 TOPORSQ9NS56 1045 aaPredicted RBP18.53■□□□□ 0.56
CLN3-231ENST00000568422 TNFSF13BQ9Y275 285 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 USP20Q9Y2K6 914 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 KIF3AQ9Y496 699 aa18.53■□□□□ 0.56
CLN3-231ENST00000568422 ZFHX2Q9C0A1 2572 aaPredicted RBP18.53■□□□□ 0.56
CLN3-231ENST00000568422 TRAPPC3O43617 180 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 NARSO43776 548 aaKnown RBP18.52■□□□□ 0.56
CLN3-231ENST00000568422 XYLBO75191 536 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 POU2F2P09086 479 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 FGFR3P22607 806 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 FSHRP23945 695 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 UVSSAQ2YD98 709 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 PPM1LQ5SGD2 360 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 GET4Q7L5D6 327 aaPredicted RBP18.52■□□□□ 0.56
CLN3-231ENST00000568422 CCDC105Q8IYK2 499 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 DRC1Q96MC2 740 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 CXCL16Q9H2A7 254 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 C17orf75Q9HAS0 396 aa18.52■□□□□ 0.56
CLN3-231ENST00000568422 RBM19Q9Y4C8 960 aaKnown RBP18.52■□□□□ 0.56
CLN3-231ENST00000568422 CITO14578 2027 aa18.52■□□□□ 0.55
CLN3-231ENST00000568422 MYH11P35749 1972 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 DOCK6Q96HP0 2047 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 CCDC169A6NNP5 214 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 PI15O43692 258 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 B3GAT3O94766 335 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 C8AP07357 584 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 CFHP08603 1231 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 GRM5P41594 1212 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 NPTX2P47972 431 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 TOB1P50616 345 aaPredicted RBP18.51■□□□□ 0.55
CLN3-231ENST00000568422 YARSP54577 528 aaKnown RBP18.51■□□□□ 0.55
CLN3-231ENST00000568422 PEX3P56589 373 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 DMP1Q13316 513 aaPredicted RBP18.51■□□□□ 0.55
CLN3-231ENST00000568422 HTR4Q13639 388 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 RAB33AQ14088 237 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 NBR1Q14596 966 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 UPP1Q16831 310 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 KCTD17Q8N5Z5 321 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 DDX27Q96GQ7 796 aaKnown RBP18.51■□□□□ 0.55
CLN3-231ENST00000568422 KIF2CQ99661 725 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 TIPINQ9BVW5 301 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 CCDC94Q9BW85 323 aaPredicted RBP18.51■□□□□ 0.55
CLN3-231ENST00000568422 MRPL4Q9BYD3 311 aaKnown RBP18.51■□□□□ 0.55
CLN3-231ENST00000568422 KCNG1Q9UIX4 513 aa18.51■□□□□ 0.55
CLN3-231ENST00000568422 CFAP54Q96N23 3096 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 SMIM28A0A1B0GU29 152 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 STK25O00506 426 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 RFX1P22670 979 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 CLCNKBP51801 687 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 AXDND1Q5T1B0 1012 aaPredicted RBP18.5■□□□□ 0.55
CLN3-231ENST00000568422 DTHD1Q6ZMT9 781 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 ANKS3Q6ZW76 656 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 GRASPQ7Z6J2 395 aaPredicted RBP18.5■□□□□ 0.55
CLN3-231ENST00000568422 DTWD2Q8NBA8 298 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 ACO2Q99798 780 aaKnown RBP18.5■□□□□ 0.55
CLN3-231ENST00000568422 POLD4Q9HCU8 107 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 PTPRHQ9HD43 1115 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 KMT5AQ9NQR1 393 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 SLC2A4RGQ9NR83 387 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 SLC38A7Q9NVC3 462 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 ARHGAP28Q9P2N2 729 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 MTRRQ9UBK8 725 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 CDH7Q9ULB5 785 aa18.5■□□□□ 0.55
CLN3-231ENST00000568422 PCDHB6Q9Y5E3 794 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms