RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 KRT35Q92764 455 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 TMEM134Q9H6X4 195 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 FAM204AQ9H8W3 233 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 ANKFY1Q9P2R3 1169 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 ZNFX1Q9P2E3 1918 aaKnown RBP21.79■■□□□ 1.08
CLN3-230ENST00000568076 ERICH4A6NGS2 130 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 TTLL13PA6NNM8 815 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 ADCY3O60266 1144 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 KRT5P13647 590 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 MARCKSL1P49006 195 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 HSDL1Q3SXM5 330 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 SLFN12LQ6IEE8 588 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.79■■□□□ 1.08
CLN3-230ENST00000568076 MSTO1Q9BUK6 570 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 C1orf112Q9NSG2 853 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 RBAKQ9NYW8 714 aaPredicted RBP21.79■■□□□ 1.08
CLN3-230ENST00000568076 AMACRQ9UHK6 382 aa21.79■■□□□ 1.08
CLN3-230ENST00000568076 TMEM110-MUSTN1A8MSY1 372 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 GUCY2FP51841 1108 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 POU5F1Q01860 360 aaKnown RBP21.78■■□□□ 1.08
CLN3-230ENST00000568076 PPIL2Q13356 520 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 C9orf131Q5VYM1 1079 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 SPOPLQ6IQ16 392 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 TRIM50Q86XT4 487 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 GPR20Q99678 358 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 TAF1DQ9H5J8 278 aaPredicted RBP21.78■■□□□ 1.08
CLN3-230ENST00000568076 YBX3P16989 372 aaKnown RBP eCLIP21.78■■□□□ 1.08
CLN3-230ENST00000568076 COMTP21964 271 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 MARK3P27448 753 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 TTLL12Q14166 644 aaPredicted RBP21.78■■□□□ 1.08
CLN3-230ENST00000568076 MESDQ14696 234 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 NAA35Q5VZE5 725 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 AADACL2Q6P093 401 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 CPNE8Q86YQ8 564 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 PRPF31Q8WWY3 499 aaKnown RBP21.78■■□□□ 1.08
CLN3-230ENST00000568076 ZNF653Q96CK0 615 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 OPTNQ96CV9 577 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 BTBD6Q96KE9 485 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 SH3GL2Q99962 352 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 NUP85Q9BW27 656 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 SLITRK6Q9H5Y7 841 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 GTF3C4Q9UKN8 822 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 TRPC6Q9Y210 931 aa21.78■■□□□ 1.08
CLN3-230ENST00000568076 CNTNAP2Q9UHC6 1331 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 DNAJC25-GNG10A0A024R161 153 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 PIK3CAP42336 1068 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 LMAN1P49257 510 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 MKRN4PQ13434 485 aaPredicted RBP21.77■■□□□ 1.08
CLN3-230ENST00000568076 CLEC16AQ2KHT3 1053 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 SEZ6Q53EL9 994 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 ACAD10Q6JQN1 1059 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 GPAT2Q6NUI2 795 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 DDX42Q86XP3 938 aaKnown RBP eCLIP21.77■■□□□ 1.08
CLN3-230ENST00000568076 ZNF564Q8TBZ8 553 aaPredicted RBP21.77■■□□□ 1.08
CLN3-230ENST00000568076 RPS6KC1Q96S38 1066 aa21.77■■□□□ 1.08
CLN3-230ENST00000568076 APOBEC3GQ9HC16 384 aaKnown RBP21.77■■□□□ 1.08
CLN3-230ENST00000568076 SRCAPQ6ZRS2 3230 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 MIF4GDA9UHW6 222 aaKnown RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 ZBTB42B2RXF5 422 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 LDHAP00338 332 aaKnown RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 NF2P35240 595 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 BIRC3Q13489 604 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 CELF3Q5SZQ8 465 aaKnown RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 ALS2CLQ60I27 953 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 SCARA3Q6AZY7 606 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 MREGQ8N565 214 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 WHAMMQ8TF30 809 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 CD101Q93033 1021 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 ZSWIM1Q9BR11 485 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 CELF4Q9BZC1 486 aaKnown RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 AZI2Q9H6S1 392 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 ERVK-5Q9HDB9 667 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 TTI1O43156 1089 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 PEX5P50542 639 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 WDR44Q5JSH3 913 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 TMEM63BQ5T3F8 832 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 ADAT2Q7Z6V5 191 aaKnown RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 FBXO16Q8IX29 292 aaPredicted RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 EIF1ADQ8N9N8 165 aaKnown RBP21.76■■□□□ 1.07
CLN3-230ENST00000568076 OR5B17Q8NGF7 314 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 FAM81BQ96LP2 452 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 ZIM3Q96PE6 472 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 CGRRF1Q99675 332 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 NEUROG2Q9H2A3 272 aa21.76■■□□□ 1.07
CLN3-230ENST00000568076 LGR5O75473 907 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 UNGP13051 313 aaPredicted RBP21.75■■□□□ 1.07
CLN3-230ENST00000568076 ACO1P21399 889 aaKnown RBP21.75■■□□□ 1.07
CLN3-230ENST00000568076 COPB2P35606 906 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 IQCKQ8N0W5 287 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 BBXQ8WY36 941 aaPredicted RBP21.75■■□□□ 1.07
CLN3-230ENST00000568076 PIK3R5Q8WYR1 880 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 GLG1Q92896 1179 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 FAM167AQ96KS9 214 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 MMP19Q99542 508 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 CCDC113Q9H0I3 377 aa21.75■■□□□ 1.07
CLN3-230ENST00000568076 FAM189A1O60320 539 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 MSCO60682 206 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 HSF2BPO75031 334 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 HARSP12081 509 aaKnown RBP21.74■■□□□ 1.07
CLN3-230ENST00000568076 PTENP60484 403 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms